Vidua macroura (Pin-tailed whydah): 128806770
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Entry
128806770 CDS
T11570
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
vmc Vidua macroura (Pin-tailed whydah)
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
vmc00536
]
128806770 (COL25A1)
Glycosaminoglycan binding proteins [BR:
vmc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128806770 (COL25A1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128806770
NCBI-ProteinID:
XP_053832562
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Position
4:complement(26904698..27202678)
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AA seq
723 aa
AA seq
DB search
MGGGGKEIKAAAAEGCASALGKSRGAAGHDGNGKPGGSGKPGLGKPGCGGDRCPRRAGPV
GSALAALLSALAAASCVYLGVRTSDLQARVAAIEGARGGFSAAAPLPPLPGFSLEQLNAM
MQEKVERLLAQKSYEHLAKIRVAREAAPECNCPPGPPGKRGKRGRRGETGPPGQPGPQGP
PGPKGEKGDQGDQGPRGLPGFPTVAALHSNQILTVKGDQGQAGPPGPPGPPGPRGPPGDT
GKDGPRGMPGLTGEPGKPGEQGLTGPQGPPGQKGSVGVPGVPGKDGQVGEPGLPGIAGEK
GEAGLKGDPGERGEKGDAGENGLKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPG
LPGLPGIKGEPGFIGPQGEPGLPGLPGTKGDRGEAGPVGKGERGEPGIPGPKGKTGEPGS
RGPKGSKGDTGERGDTGSAGPRGPPGQKGDQGATEIIDYNGNIHEALQRIATLTVTGPPG
PPGPQGLQGPKGDPGSPGAPGVDGEQGPKGSKGDTGDPGIPGEKGGIGLPGLPGANGMKG
EKGDVGLPGAQGPSMIGPPGPPGPHGPPGPMGPHGLPGPKGEPGLNGLKGLKGEPGQKGD
RGPLGLPGASGLDGKPGARGIDGPVGPHGPAGPKGERGEKGTVGDPGPRGPYGLPGFPGP
RGEKGDIGEKGEKGFRGIKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQKGVTPWLIA
KKR
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcaaagctgccgcagctgaagggtgtgcgagcgcgctg
gggaagagccgaggagccgcaggacacgatggcaacgggaagcccggcggcagcgggaag
cccggcctcgggaagcccggctgcggcggggaccgctgcccgcggcgggccgggccggtc
ggctccgcgctggccgcgctcctctcggcgctggccgcggcttcctgcgtctacctgggc
gtgcggaccagcgacctccaggccagggtcgcggccatcgaaggcgcccgagggggcttc
tctgccgccgccccgctcccgccgctgcccggcttttccttggagcagctgaacgcgatg
atgcaggagaaagtggagcgacttctcgcccagaaatcctacgagcacttggcaaaaata
cgagtagcgagagaagcggctccagagtgcaactgcccaccaggtcctcctgggaaaaga
ggtaagcggggaagaagaggagagactggacctcctggtcagcctggtcctcaaggccct
cctggtccaaaaggcgagaagggagatcaaggtgatcagggccctcggggtctgccaggc
ttccccacagttgctgctctgcacagtaatcagatcctcaccgttaagggggaccaagga
caagctggaccccctggacctccagggccaccaggacccagaggtcccccaggagatacc
ggcaaagatggtcctcgtgggatgcctggcttaacgggtgagccaggaaaaccaggagaa
caaggattgacaggacctcaggggcctccaggacaaaagggttctgttggagtgcctggt
gttccagggaaagatggacaagtgggtgaacctggtttgcctggcatagcaggagagaag
ggagaagcagggctcaagggtgaccctggagaaagaggagaaaagggggatgctggtgag
aatggactgaagggtgacacaggagaaaagggtgaccctggctcttctgcagctggaatt
aagggtgaacctggtgaatctgggcggcctggacaaaagggtgaaccaggccttcctggg
cttcctggactccctggaataaagggtgaaccaggtttcattggtccacaaggagaacct
gggttgcctgggctaccaggaacaaagggtgacagaggagaggcaggccctgttgggaag
ggtgagcgaggtgaacctggaatccctggaccaaaggggaaaacaggtgaacctggatct
agaggccccaaagggtcaaagggtgatacgggtgagagaggtgacacaggatctgcaggt
ccacggggaccacctggacagaaaggtgatcaaggtgcaacagagataattgattataat
ggcaacatccatgaagctctgcagaggattgccaccctgactgtcacgggaccaccagga
ccaccaggaccccaagggttgcaaggcccaaagggtgatcctggatccccaggagctcca
ggagttgatggagagcagggtcctaaaggctcaaaaggagacacaggtgatcctggaata
cctggagaaaagggaggaatcggactgcctggcctaccaggagccaatggcatgaaaggc
gaaaaaggagacgttggtttgcctggtgcccaaggtccttcaatgataggaccacctgga
ccaccagggccacatggtcctccaggccccatgggacctcatggactgcctggcccaaag
ggtgaaccagggttaaatggtcttaaaggattgaaaggtgaaccaggtcaaaagggtgac
agagggccccttggtcttccaggagcatctggcttagacgggaagccaggagcccggggc
atagatggcccagttggtccccatggccctgcaggtcccaaaggagagagaggtgagaag
ggaactgtaggtgaccctggaccccgaggaccatacggcttgcctggtttccctggtcct
cgaggagaaaagggtgatataggagaaaagggagaaaagggattccgtggaattaagggg
gaaaaaggggagccaggccagcctggcctggatgggctggatgccccttgccaattgggt
cctgatggattaccaatgcctggctgttggcaaaagggagtcacaccatggctcattgct
aaaaagagataa
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