Vidua macroura (Pin-tailed whydah): 128807352
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Entry
128807352 CDS
T11570
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03013
Nucleocytoplasmic transport
vmc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128807352 (UPF2)
03015 mRNA surveillance pathway
128807352 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmc03019
]
128807352 (UPF2)
Messenger RNA biogenesis [BR:
vmc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128807352 (UPF2)
mRNA cycle factors
P-body specific factors
128807352 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
128807352
NCBI-ProteinID:
XP_053833659
LinkDB
All DBs
Position
5:67425461..67476615
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AA seq
1270 aa
AA seq
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MPAERKKPNMEEKESQLNNKEKEFSERRPVSTREKPKEDVKVGMKRETLKVPEDKKKKME
EDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEEAAQLK
EKEEAHQLHQEAWERHQARKELRSKNQNAPESRPEENFFSRLDSSLKKNTAFVKKLKTIT
EQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLLQ
AWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRESH
THVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFTS
LTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLDE
NMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAIL
FKDNEKYSQNKDSSKDESRDSKDAKDNKEAAGNEDLELELENLDINDDALELDCGDEAED
LTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRR
KLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFKFHVRKKDQINIET
KNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHL
RTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKD
LSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVN
PDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDVW
TKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAVRQVQDLEREFLIKLGIVNDKDSKDS
ITEGENLEEDEEEEEGGAETEEQSGNESEVNDPEEEEGSDNEEEEGEEEEEENTDYLTDS
NKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAI
PLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQ
QAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNAD
LIFKTGGRRR
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccaaatatggaagaaaaagaatctcagttaaataataaa
gaaaaagaatttagtgaaaggcgaccagtgagcaccagggagaagccaaaagaagatgtg
aaggttggcatgaagagagagactttaaaggttcctgaagataaaaagaaaaaaatggaa
gaggataaaagaaagaaggaagacaaggagcggaagaaaaaagaagaggataaagtaaag
gcagaagaggagcaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaagaggag
aaaaagaaacaagaggaggaagaaaaaaagaaacaagaagaagaagctgctcagctgaag
gagaaggaggaagcacatcagctccatcaggaggcttgggagcgccatcaggcaagaaaa
gagctccgcagcaaaaaccagaacgcaccggagagtcgtccggaggaaaacttcttcagc
agactggactccagcctgaagaaaaacacagcttttgttaagaagctaaaaaccattaca
gagcaacaaagggattccttgtcccatgactttaatagcctgaatttaagcaaatacatt
gccgaagcagtagcttctattgtggaggccaaactgaaaatatcagacgtgaactgtgct
gtgcacttgtgttccctctttcaccagcgatacgctgattttgctccttcgttacttcag
gcctggaaaaaacattttgaagcaaggaaagaagagaagactcccaacattaccaagtta
agaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaaggaa
ggtttgtctttaatctatgagcagcttaaaaatattattaacgctgatcgagaatcccac
actcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggtttg
gtaccaaggaaggtaaaaactgttgcagagaagtttaacttgagctttcctcctagtgag
ataattagcccagagaaacaacagcccttccagaatttgttgaaggaatactttacatct
ttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaacaga
cgcattctccactccaaaggagagctgagtgaagatcgacacaagcagtatgaggagttt
gcaatgtcgtatcagaagctgttggcaaattctcagtctctggctgatcttttggatgag
aacatgcctgacctcccccaagaaaaaccaacacctgaggaacacggacctggtatcgat
attttcactccaggaaagcctggagaatatgacctggaggggggtatctgggaagatgaa
gatgctagaaacttctatgagaatctcattgacttgaaggcttttgtgccagcaattttg
tttaaagataatgaaaaatattcccagaacaaggattcgagcaaagatgaatcaagagat
tcaaaagatgccaaagataataaggaagcagctgggaatgaggatctggaattggagctg
gaaaacctggatattaatgatgatgcactggagttggactgtggagatgaggcagaagat
cttacaaagaaacttcttgatgagcaagaacaagaggatgaagaagccagtactggatct
catttaaaactcatagtagatgcttttcttcagcagcttccaaattgtgtcaacagagac
ctcatagacaaggcagcaatggatttttgcatgaatatgaatacgaaagccaacagaaga
aaactagtacgagcacttttcatagttcctagacaaagattggatttgctaccattttat
gcaagactggttgccacattgcatccctgtatgtctgatgtagcagaggatctctgttcc
atgctgaaaggagatttcaagttccatgtaagaaaaaaggaccagatcaacattgaaaca
aagaataaaactgtgagatttattggtgagcttaccaagtttaagatgttctccaaaaac
gatactctccactgtttaaagatgcttctgtcagacttctctcatcaccatattgaaatg
gcgtgtaccttgctggaaacctgtggaagattcctcttcagatcaccagagtctcaccta
agaaccagtgttcttttggaacaaatgatgaggaaaaaacaagcaatgcatcttgatgca
cgctatgttacaatggtagaaaatgcctattactactgtaatccccctccagctgaaaaa
actgtgaagaaaaaacgtcctcctttgcaggaatatatccgtaagcttctctacaaggat
ctctccaaggtcaccacagagaaggtcctgagacagatgcgcaagctgccttggcaggat
gcagaagttaaggactatgttatatgctgtatgatcaacatctggaatgtgaaatataat
agtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtggga
attcatgttgtggatggagtactagaggatattcgactaggaatggaggttaatcaaccc
aagttcaaccaacggcggatcagcagtgccaagtttttgggggagctttacaattatcga
atggtggagtcagctgtaatatttagaactctgtattccttcacctcatttggtgtgaac
cctgatggcagtcctagtccactggaccctccagaacatcttttcagaatcagacttgtc
tgtactatcctcgatacctgcgggcagtattttgacagaggatccagcaagcgaaaactt
gattgcttccttgtatattttcagcgctatgtgtggtggaaaaaaagtctggatgtttgg
acaaaagaccatccttttcctatagacatagactatatgatcagtgatacactggaactg
ctgagaccaaagataaagctctgcaattctctggaagaagctgtcagacaggtgcaagac
ttggaacgagaattcttaataaaattgggaattgtgaatgacaaagattccaaagattct
attacagaaggagagaatttggaagaggatgaagaagaggaggaaggtggagcagagaca
gaggaacaatctggaaatgaaagtgaagtaaatgatccagaagaagaggagggctctgac
aatgaggaagaagagggtgaagaagaggaggaagagaacactgattatcttacagactcc
aataaggaaaatgaaaccgatgaggagaatacagaagtaatgattaaaggaggaggactg
aagcatgtcccttgtgcagaggatgaggacttcattcaggccttggataaaatgatgctg
gaaaatcttcagcaacggagtggtgaatctgttaaagtgcatcagttggatgttgctatt
cctctgcatctcaaaagtcagctgaagaagggccccccacttggaggtggggaaggagag
tcagagtctggggacacaatgccatttgtcatgttaacaagaaaaggcaacaaacagcag
tttaagatcctaaatgtaccgatgtcttcccaacttgctgcaaaccattggaaccagcag
caagcagaacaggaggagaggatgaggatgaaaaagctcactttggatatcaatgaacgg
caggaacaagaggactatcaggaaatgttgcagtctctggcacagcgtccagctccagca
aatactaatcgtgagcggcggcctcgttaccagcacccgaagggagcacctaatgcagat
ctaatctttaaaaccggtgggaggagacgttga
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