Vidua macroura (Pin-tailed whydah): 128808725
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Entry
128808725 CDS
T11570
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128808725 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmc03019
]
128808725 (CPSF2)
Messenger RNA biogenesis [BR:
vmc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128808725 (CPSF2)
U7-dependent histone pre-mRNA processing factors
128808725 (CPSF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
128808725
NCBI-ProteinID:
XP_053836156
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All DBs
Position
6:complement(16100216..16114064)
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AA seq
811 aa
AA seq
DB search
MKFFFVSVNETFCPPFRLVLLEIKHLERKMTSIIKLTTLSGVQEESALCYLLQVDEFRFL
LDCGWDENFSMDIIDSLRKHVHQVDAVLLSHPDPLHLGALPYAVGKMGLNCAIYATIPVY
KMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPA
GHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPR
RKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNN
VSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHSLSDLARVPSPKVVLASQP
DLECGFSRDLFIQWCQDSKNSIILTYRTTPGTLARFLIDNPSEKVIDIELRKRVKLEGKE
LEEYLEKEKLKKEAAKKLEQSKEADIDSSDESDAEEDIDQPTLHKTKHDLMMKGEGSRKG
SFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGEEPM
DQDLSDVPTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEAS
QDLAECCRAFGGKDIKVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWI
DGVLDMRVSKVDTGVILEEGELREDEDLEMQVDVPSSDSSVIAQQKAMKSLFGDDDKEMC
EESEIIPTLEPLPPHEVLGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVR
RTETGRIGLEGCLCQDFYRIRDLLYEQYAIV
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttttctttgtgtcagtcaatgaaacattttgtcccccattcagattagttctt
ttggagattaaacacttggagaggaaaatgacatcgattatcaagttgactacgctctcg
ggggtgcaggaggaatctgccctctgctatcttttgcaagttgatgagtttcgttttctt
ttggactgtggctgggatgaaaacttttctatggatattattgattctctgaggaagcat
gtacaccaggttgatgctgttcttctttcccaccctgaccctctacatcttggtgcactt
ccgtatgcagttggaaaaatgggattgaattgtgccatttatgcaactattcctgtatat
aaaatgggacagatgtttatgtatgatctctaccagtcccgccataatactgaagatttc
acactctttacattggatgatgtagatgcagcctttgataagatacaacagctgaagttt
tctcagattgtgaacttaaaaggcaaaggacatggtttgtcaatcacaccattgccagct
ggtcacatgataggaggcacaatttggaagattgtcaaggatggggaggaagaaattgtt
tatgccgttgatttcaaccacaagagggagatccatctgaatggatgttccttggaaatg
ttgagcaggccttcattgcttattacagattcatttaatgctacttatgtacaacccagg
aggaagcaaagggatgaacagctgctgactaatgttttggagacattacgaggtgatgga
aatgtattaatagccgtggatacagcaggcagagttctggaacttgctcagcttcttgat
cagatctggagaacaaaagatgcaggattaggagtctactctcttgcacttttgaataat
gtcagctacaatgtagtggagttctctaaatcacaggttgaatggatgagtgacaaattg
atgaggtgctttgaagacaagagaaacaacccttttcagttccgccatctctccttatgt
cacagtctgtctgatctggctcgagtgccaagtccaaaagttgttcttgccagtcagcct
gacttggagtgtgggttttctagagatctttttattcagtggtgccaggattccaaaaac
tccataattttaacttaccgcactacacctggaacattagcgcgattcctgattgataat
ccatctgaaaaagttatagatattgagttgagaaaacgtgtcaagttggaaggaaaagaa
cttgaagaatacctagaaaaggaaaaactaaagaaagaagcagctaagaagttagagcag
tctaaagaggcagatattgattccagtgatgagagtgatgctgaggaggatattgatcag
ccgactttacataagaccaaacatgatttgatgatgaaaggtgaaggtagccggaaagga
agcttcttcaaacaggcaaaaaaatcttatccaatgtttccagctcctgaagaaagaatt
aaatgggatgaatatggtgaaattatcaaacctgaggattttctagttccagaactacaa
gcaacagaagaagaaaaaagcaaattagagtctggtttgacaaacggagaggaacctatg
gaccaggatttatcagatgttcctaccaaatgtatttctgcaacagaatccatggaaatt
aaagccagagttacatatattgactatgaaggacgttcagacggggactcaattaaaaaa
attattaaccaaatgaaaccaagacaactggtgattgtccatggaccacctgaggccagt
caggaccttgcagaatgttgcagagcttttggtggaaaagatattaaagtttacatgccc
aaacttcatgaaactgtagatgctacaagtgaaactcacatttaccaggtcaggttgaaa
gattctcttgtcagctctcttcagttctgtaaagccaaggatgctgaattggcttggata
gatggtgttctggacatgagggtttccaaagtggatactggagttattttggaagaggga
gagttgagggaagatgaagacttagagatgcaagtggatgtgccttcttcagactcgagt
gtgattgcacaacagaaggccatgaaaagcctctttggcgacgatgacaaggagatgtgt
gaggagagtgagatcattcctactttagaacctctgccacctcatgaggttcttgggcat
cagtctgtgtttatgaatgagccaagactgtctgacttcaagcaggttctcttgcgggaa
ggtatacaagctgaatttgttggaggagtgcttgtgtgcaacaacctggtggctgtccgc
aggactgaaacagggcgtattggattggaaggctgcctctgccaggacttctataggata
agagaccttttatatgagcaatatgctattgtctaa
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