Vidua macroura (Pin-tailed whydah): 128808939
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Entry
128808939 CDS
T11570
Symbol
GTF2H1
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03022
Basal transcription factors
vmc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128808939 (GTF2H1)
09124 Replication and repair
03420 Nucleotide excision repair
128808939 (GTF2H1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vmc03021
]
128808939 (GTF2H1)
03400 DNA repair and recombination proteins [BR:
vmc03400
]
128808939 (GTF2H1)
Transcription machinery [BR:
vmc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
128808939 (GTF2H1)
DNA repair and recombination proteins [BR:
vmc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
128808939 (GTF2H1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
128808939
NCBI-ProteinID:
XP_053836573
LinkDB
All DBs
Position
6:complement(49297378..49321197)
Genome browser
AA seq
634 aa
AA seq
DB search
MATGKRPPRDRGGGREGRRRRVTAGGALLQGRSPVTWCGSHPRRPVPVTCPPRPPHGPGG
GRSPTPIAPLALGAAPGATRTFTVATMATSSEEVLLIVKKVRQKKQDGALYLMAERIAWA
PEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKD
LLQQLLPKFKRKANKELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLSLNAGDN
SAAPNKQDVGISAAFLADVRPQTDGCNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNM
TEREFWTRFFQSHYFHRDRLNTGSKDLFAECAKLDEKGLKAMVSQGVKNPLIDLTALEDK
TLDEGYGAASVASTSNASKSARESSNAAIIKRFNHHSAMVLAAGLRKQEAQNDHYSETSS
TDGNSRDSDFFQPPLKKVKLQEAIEYEDLSKNNSVKTIALNLKKSDRYYHGPTPIQSQQY
ATSQDIINSFHSIRQEMEAYVPKLTQVLSSVDAASTIAVLSPGGALMQGGTQQAINQMVP
NDIQSELKHLYVAVGELLRHFWSCFPVNTPFLEEKVVKMRSNLERFQVTKLCPFQEKIRR
QYLSTNLVSHIEEMLQTAYNKFHTWQSRRMLKKT
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggggaagcggccgccacgtgaccggggcgggggccgggaggggcgccggcgc
cgcgtgaccgccgggggcgcgctgcttcagggccgctcccctgtcacgtggtgcggatcc
cacccccgacggcccgttccggtcacgtgcccaccccgcccgccccatggccccggcggc
ggccgcagcccgacccccatagcaccgctcgcactcggagcagctcctggcgcaacccgc
acgttcactgtagccacaatggcaacatcatctgaagaagtgttgctgatagtgaagaag
gtgcgtcagaagaagcaggatggggccctctacctgatggctgaacgcattgcctgggca
cccgagggcaaggaccgcttcaccatcagccacatgtatgcagacatcaaatgccagaaa
atcagtccagaaggcaaagctaaaattcagctgcagctggtattgcatgcaggggataca
accaacttccacttctccaatgaaagcacagcagtgaaggagcgagatgcggtcaaggat
cttcttcaacagctcttgcccaagttcaaaaggaaagctaataaagaacttgaggagaag
aacagaatgctgcaagaagatcctgttttgtttcagctctataaagaccttgttgtgagc
caagtaatcagtgctgaagaattctgggccaaccgtttaagcctgaatgcaggggataat
tctgcagcacctaataagcaggatgtgggaatctctgcagcattcctggctgatgtacgg
cctcagacagacggctgcaatgggctgaggtacaacttaacttcggatattattgaatcc
atatttcggacataccctgcagtaaaaatgaaatatgcagagaatgttccacataacatg
actgagagggaattctggacacgattttttcagtctcattattttcatcgggacaggctc
aatacaggctcaaaagacctctttgcagaatgtgctaaactggatgagaaagggttaaaa
gcaatggtgtctcaaggagtgaaaaaccctctgatagatttaacagctttggaagataaa
acattagatgaaggctatggtgctgcttctgtggcctctacatcaaatgcctcaaagtct
gctagagaaagcagcaatgctgccatcataaaacgctttaatcatcatagtgccatggtc
cttgcagctggcctcagaaaacaagaagcacaaaatgaccattacagtgagaccagcagt
acggatggaaactccagggattcagatttctttcagccaccactgaaaaaggtaaaactg
caggaggccattgaatacgaagatttatcaaagaataatagcgttaaaactattgcacta
aacttaaagaagtctgataggtattaccatggtccaactccaattcaatcacagcaatat
gcaaccagtcaggatataattaattcatttcatagtattagacaagaaatggaagcatat
gtacccaaactaactcaggttctttcaagtgttgatgctgccagcactattgcagtcctg
tcacctggaggagcacttatgcagggtggaacacagcaagccataaaccagatggtgcca
aatgacattcagtctgaactaaaacatttgtatgtggcagtaggggaactgctacgacac
ttctggtcctgcttccctgttaacacaccattcctagaagaaaaggttgtgaaaatgagg
agcaacttggaaagatttcaggttacaaagctctgcccattccaagaaaagattcggaga
caatatttaagcacaaatttggtaagtcatatagaagaaatgctgcagacagcctacaat
aaattccacacgtggcagtcccggcgcatgctgaagaagacgtga
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