KEGG   Vidua macroura (Pin-tailed whydah): 128809245
Entry
128809245         CDS       T11570                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
vmc  Vidua macroura (Pin-tailed whydah)
Pathway
vmc03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:vmc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    128809245 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vmc03400]
    128809245 (TDP1)
DNA repair and recombination proteins [BR:vmc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     128809245 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 128809245
NCBI-ProteinID: XP_053837049
LinkDB
Position
6:complement(17022134..17063354)
AA seq 639 aa
MLQEGAHGKWTISSSDESAEENSDSEKPCTSSLSDPACGRTSGPQYPCSEARKAAHKRRA
SPLKLTDKSLSTDAPPAVKQRPSQEGSGWCLSSSDEEPEDQQKHIHKEAVKEEKCDVPEE
HPLNLCKDDKLLENLKEEEYNVTPSEAQDTWDLVTGGNPFRFFLTKVSGIEQNYNSGALH
IKDILSPLFGTLISSAQFNYCIDVGWLVRQYPQEFRKKPLLIVHGEKRESKAELIAQARP
YENISFCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIAEDWYQKTQGIWLSPLYPR
LSKGASGSAGESVTNFKSDLISYLAAYNSPALKEWIDLIQEHDLSETRVYLLGSTPGRYQ
GSDKEKWGHLRLRKLLKEHALSIPAQESWPLVGQFSSIGSMGADGSKWLCSEFQESLVAA
GSSVTTFRKCDVPIHLVYPTVNNVRQSLEGYPAGGSLPYSIQTAQKQLWLHSYFHKWSAE
VTGRTHAIPHIKTYMRLSPDFQKIAWFLVTSANLSKAAWGALEKNGSQLMIRSYELGVLF
LPSAFERCFSPLIFVALLWACCNRSMLGTPEVDAALQGLDKGYFHVGRGKLPERKDSATY
FPVPYDLPPEQYGSKDQPWIWNIPYTDAPDTHGNMWVPS
NT seq 1920 nt   +upstreamnt  +downstreamnt
atgcttcaggaaggcgcacacggtaaatggacaatatctagcagcgatgaaagtgccgag
gaaaattctgacagtgaaaaaccgtgtacatcttcactgtcagatcctgcgtgtggtaga
acaagtggaccacaatatccatgctctgaagctaggaaagctgctcacaagagaagagct
tctcccctgaaactcactgataaaagtctttctacagatgcacctccagcagtaaaacag
agaccaagccaagaaggctcaggttggtgcctttctagtagtgatgaagagcctgaagat
cagcaaaagcatatccacaaagaagcagtgaaagaagaaaaatgtgatgtgcccgaagag
catcctttgaatctttgcaaagatgacaaactcttggagaatctgaaagaagaggagtat
aatgtaacacccagtgaagcccaggatacctgggatttggtgactggaggcaatcctttc
aggttttttctcactaaagtcagtggaattgaacagaactataattctggagccctgcac
ataaaagatattttgtctcctctttttggaactctcatatcttctgcccagtttaactac
tgtatagatgtgggatggcttgtaagacagtacccgcaggaattcaggaagaagccgttg
ctgatagttcacggtgagaagagagaatccaaagctgaactaattgcacaagcacggcct
tatgagaatattagcttttgtcaggctaaactggatattgcatttggaactcaccatacg
aaaatgatgctgttgctgtatgaagaaggtcttcgagttgtgatacatacatccaatctt
attgctgaagattggtaccagaaaactcagggaatatggctaagccctttatatccaagg
ctgtctaagggagcatctggttctgctggtgaatctgtgactaattttaagtctgaccta
ataagttacttggcagcttacaattctcctgcactcaaggaatggatagatctgattcaa
gaacatgatttatcagaaacaagagtgtatctgcttggttctacccctggacgatatcaa
ggcagtgataaagaaaagtggggccatcttaggctcagaaagcttttgaaggagcatgct
ttgtcaataccagcacaggaatcctggcctcttgtgggacagttctcaagcattggttca
atgggagctgatggatccaaatggctgtgctcggagttccaggagagcctggtggctgca
ggcagcagtgtgacaactttccgtaaatgtgatgtcccaattcatttggtttatcctact
gtgaacaatgtgaggcaaagtctagaaggctatcctgctggtggctcacttccgtacagt
atacagacagcacagaaacagctgtggttgcattcctattttcacaaatggtcagcagaa
gtcacgggtcgaactcatgctatacctcacattaagacatacatgagactctctcctgac
ttccagaagattgcttggttcttggtaacaagtgccaatctctctaaagcagcctgggga
gctctggagaaaaatggcagccaactgatgatccgttcttacgaacttggagttcttttc
ttgccttcagcatttgagaggtgcttcagccctctgatctttgtggcccttctgtgggct
tgctgtaacaggtccatgctggggaccccagaggtggatgcagcactgcagggattggac
aaaggttactttcatgtaggaaggggaaagcttccagaaaggaaagattcagcaacatat
tttcctgtaccttatgacctcccaccagaacagtatggaagcaaagatcaaccatggatt
tggaatattccttacactgatgctcctgatacacatggaaatatgtgggttccatcataa

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