Vidua macroura (Pin-tailed whydah): 128809332
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Entry
128809332 CDS
T11570
Symbol
CLP1
Name
(RefSeq) LOW QUALITY PROTEIN: polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128809332 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmc03019
]
128809332 (CLP1)
Enzymes [BR:
vmc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
128809332 (CLP1)
Messenger RNA biogenesis [BR:
vmc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
128809332 (CLP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
AAA_18
TniB
AAA_22
AAA_16
nSTAND3
MMR_HSR1
CbiA
PduV-EutP
Motif
Other DBs
NCBI-GeneID:
128809332
NCBI-ProteinID:
XP_053837188
LinkDB
All DBs
Position
6:56683045..56685513
Genome browser
AA seq
522 aa
AA seq
DB search
MSCERHANDPGTHPEGSGGEEGEHHCNEMQTRGGAAGGMQMRCKRAAGTGQGTPPHVTPD
APRDPGXPALPAPRSDVTSVAAAAAGGHRARDPRVAVMADDGGEEKKQVAKFELERETEL
RFEVEAAQTVQLELLTGMAEVFGTELTRNKKFTFDAGAKVAVFTWHGCTVQLSGRTEVAY
VSRDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVVGPTDVGKTTVCRLLLNYAVRLGR
RPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSLQAPLVYHFGSTTPGTNIKLYNKI
TSCLADVFNQRCEVNRRASVSGCVINTCGWVKSSGYQALVHAASAFEVDVVVVLDQERLY
NELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFRGCFYPHAFDVKFSD
VKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVSTADSPDDNISETSV
AGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIRFMDLK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgcgaacggcatgcaaacgatcccgggacgcatcccgagggatcggggggggaa
gagggggagcaccactgtaatgagatgcaaactcgaggaggggccgcgggcggtatgcaa
atgagatgcaaacgagccgcaggaaccggtcagggcacgccccctcacgtaacccccgac
gccccacgtgatccagcaccggcgctcccggcgccccgctctgacgtcacttccgtcgcg
gccgcggcggccgggggacaccgggcccgggacccccgcgtcgccgtcatggcggacgat
ggcggcgaggagaagaagcaggtggccaagttcgagctggagcgggagacggagctgcgg
ttcgaggtggaggcggcgcagacggtgcagctggagctgctgaccggcatggccgaggtg
ttcggcaccgagctcacccgcaacaagaagttcacgttcgacgcgggcgccaaggtggcc
gtgttcacgtggcacggctgtaccgtgcagctcagcggccgcaccgaggtggcctacgtg
tcgcgggacacgccgatgctgctgtacctgaacacgcacacggcgctggagcagatgcgg
cgccaggccgagcgggaggacgagcgcgggccccgcgtcatggtggtggggcccaccgac
gtgggcaagaccaccgtgtgccgcctgctgctcaactacgccgtgcgcctgggccgccgg
cccaccttcgtggagctggacgtggggcagggctcggtgtccatccccggcaccatgggc
gcgctctacatcgagcgcccggccgacgtggaggagggcttctccctgcaggcccccctc
gtctaccacttcggctccaccacgcccggcaccaacatcaagctctacaacaagatcacg
tcgtgcctggccgacgtcttcaaccagcgctgcgaggtgaaccggcgggcgtcggtgagc
ggctgcgtcatcaacacctgcggctgggtcaagagctcgggctaccaggcgctggtgcac
gccgcctccgccttcgaggtggacgtggtggtggtgctggaccaggagcgcctctacaac
gagctcaagcgggacctgccccacttcgtgcgcaccgtgctgctgcccaagtccggcggc
gtggtggagcgctccaaggacttccgccgggaatgccgggacgagcgcatccgcgagtac
ttctacggcttccgcggctgcttctacccccacgcctttgacgtcaagttctccgacgtc
aagatctacaaggtgggcgcgcccaccatcccggactcgtgcctgccgctgggaatgtcg
caggaggacaaccagctgaagctggtgccggtgacgccggggcgggacatggtgcaccac
ctgctgagcgtcagcaccgccgacagccccgacgacaacatctccgagaccagcgtggcc
ggcttcatcgtggtcaccggcgtggacctggagcgccaggtcttcaccgtgctgtcaccg
gctccgcggcccctccccaagaacttcctgctcatcatggacattcgcttcatggacctc
aagtag
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