Vidua macroura (Pin-tailed whydah): 128814533
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Entry
128814533 CDS
T11570
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128814533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmc03019
]
128814533
Messenger RNA biogenesis [BR:
vmc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128814533
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
128814533
NCBI-ProteinID:
XP_053846435
LinkDB
All DBs
Position
14:complement(3456314..3478215)
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AA seq
571 aa
AA seq
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MATELEPPAAGAVSGAAPLEAEEDEEHWLYGDDTTGKQEDGPISGHTESAHPLQDAPQEN
RPVNNEDREMSQHVRVPLSTALPSGEDDEDDSDSDSDDDDVKVTIGNIKTGAPSYMGTPM
NLNLKTGRGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYF
NYGFNEETWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVESNIIKTEFKT
DFLALVGGRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGS
KPQPPQQPQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPG
LPPPGPIPGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSH
TPWVTTVDKGTSSSSSSHWEYSGSRRDRERERDRDRDRERDRDRDRTPTTSEYNNDDERY
RYYSRERSYDFERDYRRSRDRSREREERHRERRHRDKDDGSKHKSSRRKQHESEEGESHR
RHKHKKNKRSKEEKEASEDGAQEGEEQDTKE
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgagctggagccgccggccgccggcgccgtgtcgggcgcggcgccgctggag
gcggaggaggacgaggagcactggctgtacggggatgacaccactggtaagcaagaagat
ggaccaatttctggacacacagaatctgctcaccctctgcaggatgctccccaggagaac
cggcccgtcaacaacgaggacagagagatgtcccagcacgtacgtgtcccactgtccacg
gcccttcccagtggtgaggatgatgaggatgacagtgacagtgacagcgatgacgatgat
gtgaaggtcacaattggcaacatcaaaacaggagcgccgtcctacatgggaactcctatg
aatctaaacttaaaaacgggtagaggctatggagcatcagcttcagccaagttgcagccc
aaaggtattgacttggatgccgcggggaatataaatggattgcctgtgatagaagtggat
ttggattcatttgaagacaaaccatggaggaaaccaggtgctgatctttctgattacttt
aattatggattcaatgaagaaacatggaaagcttattgtgaaaagcagcggcggcttcag
ctggggctggaccctgctcctcccatcagcactgagaacaagatcacggttcagcaggga
agaacaggaaatgctgaaaaagaagtggaaagcaacatcatcaaaacagagttcaaaaca
gacttcttggctctggtgggaggacgaatgaaggctggacctcctcccaacaggaagctg
ggtgggaccattgatgtgatcgggggccaggcaggcacaatccgcagggtggaagggaga
cgccgggataaacacgcctcggaggaaaaccccatccaggtcctgggagaccatggcagc
aagccccagcctccccagcagccccagcagccctcccagccccagcagcctcctcagcag
cagccgttcgctccaccagcggggcctccgcctcccccgctcgctgggcctcctcctcca
cacttcctgcaccctcctcctccagtgacttctgttccacctcccctgcatcctccaggc
ctgccacctccaggtccaattccaggattgttcccaccacctctggcaccaccaccagct
ctcctcatcccaaccttggatgggcagccagccagctacaacaacaggcagccacctccc
tttggctacaactctgcagattcaggtttcatcagctacccccccatctccacgtcccac
acgccctgggtgaccacggtggacaagggcacgagcagctccagcagcagccactgggag
tactcgggctccaggcgggacagggagcgcgagcgagaccgggaccgggacagggagcga
gaccgggaccgggaccgcaccccgaccaccagtgaatacaacaatgacgacgagcggtac
cgctactacagccgcgagcgcagctacgacttcgagcgcgattaccggcgcagccgcgac
cgcagccgcgagcgcgaggagcggcaccgcgagcgccgccaccgcgacaaggacgacggc
agcaaacacaaatcctcccgcaggaagcagcacgagagcgaggagggcgagagccaccgg
cgccacaagcacaaaaagaacaagcggagcaaggaggagaaggaggccagcgaggacggt
gcccaggagggcgaggagcaggacaccaaggagtga
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