KEGG   Vidua macroura (Pin-tailed whydah): 128815301
Entry
128815301         CDS       T11570                                 
Symbol
CPSF4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
vmc  Vidua macroura (Pin-tailed whydah)
Pathway
vmc03015  mRNA surveillance pathway
vmc05164  Influenza A
Brite
KEGG Orthology (KO) [BR:vmc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    128815301 (CPSF4)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    128815301 (CPSF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vmc03021]
    128815301 (CPSF4)
   03019 Messenger RNA biogenesis [BR:vmc03019]
    128815301 (CPSF4)
Transcription machinery [BR:vmc03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     128815301 (CPSF4)
Messenger RNA biogenesis [BR:vmc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     128815301 (CPSF4)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_3 zf-CCCH_2 zf-CCCH_12 zf-CCHC zf-CCCH_4 zf-CCCH_RBM22 zf-CCCH_DUS3L zf-CCHC_3 zf-C3H1 Nab2-like_zf-CCCH_
Other DBs
NCBI-GeneID: 128815301
NCBI-ProteinID: XP_053847873
LinkDB
Position
16:13747324..13754105
AA seq 243 aa
MQELIASVDHITFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPACKFMHPRFELPVGTTEQPP
LPQPTQTQQKRTPQVIGVMQSQNNNSGNRGPRPLEQVTCYKCGEKGHYANRCTKGHLAFL
SGQ
NT seq 732 nt   +upstreamnt  +downstreamnt
atgcaagagctcatcgccagcgtggaccacatcacgttcgacctggagctggccgtggag
cagcagctgggggcacagccgctccccttccctggcatggacaaatcgggcgcagctgtc
tgtgagttttttttaaaggcggcatgtggaaaaggaggcatgtgcccgttcagacacatc
agtggggaaaagacagttgtttgtaaacactggctacgaggactgtgcaaaaagggagac
cagtgcgagttcctacacgagtacgacatgaccaagatgcctgagtgttacttctactcc
aagtttggggaatgcagtaacaaggaatgtccattcttgcacattgacccggagtcgaag
atcaaagactgtccctggtatgacagaggcttctgtaagcacggtcccctgtgcagacat
cggcacactcggagagtcatttgtgtgaattacctggtgggattctgtccagaggggcct
gcctgtaaattcatgcaccctcggtttgaactgccagtgggaaccacagagcaaccacca
ctgcctcagccaacacaaacacagcaaaagaggacaccccaagtcattggagtcatgcaa
tctcaaaataacaacagtgggaacagaggaccccggccattggaacaggtcacctgctac
aagtgtggtgaaaaaggtcattatgccaacagatgcaccaaaggacacctggcctttctc
agtggacagtga

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