Vidua macroura (Pin-tailed whydah): 128815857
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Entry
128815857 CDS
T11570
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03015
mRNA surveillance pathway
vmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128815857 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
128815857 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmc03019
]
128815857 (PABPC1L)
03041 Spliceosome [BR:
vmc03041
]
128815857 (PABPC1L)
Messenger RNA biogenesis [BR:
vmc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128815857 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
128815857 (PABPC1L)
Spliceosome [BR:
vmc03041
]
Complex C
Other components
Complex C specific factors
128815857 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RBD_DEAH11
RRM_5
RRM_RdRP1_2
RRM_3
ATP-grasp_2
Motif
Other DBs
NCBI-GeneID:
128815857
NCBI-ProteinID:
XP_053848903
LinkDB
All DBs
Position
17:complement(6211467..6221936)
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AA seq
657 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKERE
AEVGARAIEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSNGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRVLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQTPPGYFLPPMPQPQTRAAF
YGPSPVVPVRPATRWSAQPSRPPSVYPEATPILRAAVPPRRLLSNISTTRQASTQVPRVP
PQAHRVGECEKDPQEIKLGHHRGGKGACSNIGTQTVSTRVPSSSALPRGTQQYKYSSSAR
NMQPMGHMPPVVAPQVGEPAVHVQGQEPLTASLLAAAPPQEQKQMIGERLYPLIHVMHPS
LAGKITGMLLEIDNSELLLLLESPDSLRSKIEEAVTVLQAHQSTETSHKGSAGAFLP
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccagtggccctggctatcccttagcctctctctatgtgggagacctgcaccca
gatgtgaccgaagccatgctctacgagaagttctcccctgctgggcccatcatgtccatc
cgagtctgtcgggacgtggccacacgccggtcgctgggctatgcctacataaacttccag
cagcctgtggatgctgagcgagccctggacaccatgaacttcgaggtgatcaaaggccga
cccatccgcatcatgtggtcccaacgggaccccgggctcaggaaatcaggggttggaaac
gtcttcatcaagaacctggatgactccattgacaacaaagccctgtatgacacattctct
gcctttggaaacatcctgtcatgcaaggtggtttgtgatgaaaatggatcccgtggctat
ggcttcgtccactttgagacacatgaggcagcaactcgggccattgagaccatgaatggc
atgttgctcaatgacaggaaggtgtttgttggacacttcaaatcccgcaaagagcgcgag
gcagaggttggggctagggcaatagaattcaccaatgtctacatcaaaaactttggggat
gacatggatgatgacagactgcgggaaatattctccaaatttggaaagacgttgagcgtc
aaggtcatgatggacagcaatggccgctccaagggctttggattcgtcaactttgagaag
cacgaagaagcccagaaggcggtggctgacatgaacgggaaggagatcaacgggcgggtg
ctgtacgtgggccgcgcccagaagcggctggagcgccagagcgagctcaagaggaaattt
gagcagatgaagcaagagcgggtgaacaggtaccagggggtcaacctgtatgtgaagaac
ttggatgatgggatagatgatgagaggctgaggaaggagttctccccctatggcaccatc
accagtgccaaggtgatgacagagggtggccgcagcaaagggtttgggtttgtatgtttt
tcctccccagaagaggctaccaaggccgtgacagaaatgaacgggcgcattgtcagcacc
aagcctctctacgtcgcgctcgctcaaaggaaagaggagcggaaagcaatcctcaccaac
cagtacatgcagagattggccaccatgagggccctgcctggccctctcctgggctctttc
cagacccccccagggtacttcctaccccccatgcctcagccacaaaccagagctgccttc
tacggccccagccctgttgtcccagtccgccctgccactcgctggagtgcgcagccctcc
cggcctccctcagtgtatcctgaagccacccccatcctgagggctgccgtgccgccccgg
cgcctgctgtccaacatcagcaccacgagacaggcctccacccaggtgccccgtgtgccc
ccccaggcccacagagtgggtgagtgcgagaaggacccccaggagatcaagctgggacat
caccgtggtggcaagggtgcttgctccaacatcgggacacagacagtcagcacccgggtg
ccctcctcatctgccctgccacggggtacccagcagtacaagtactcctcatctgccagg
aacatgcagcccatggggcacatgccacccgtggtggccccacaggtgggagaacctgct
gtgcatgtccaggggcaggagccactgacagcatccttgcttgcagcagccccccctcag
gagcagaagcaaatgatcggcgagcgcctctaccctctgatccacgtgatgcatccctcg
ctggctggcaagatcactgggatgctgctggagatagacaactccgagctgctgctgctc
ctggagtccccagactccctgcgctccaagatcgaggaagcagtcactgttctccaggca
caccagagcactgagacgtcccacaagggcagtgctggggcgttcctgccctga
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