Vidua macroura (Pin-tailed whydah): 128817375
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Entry
128817375 CDS
T11570
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03030
DNA replication
vmc03420
Nucleotide excision repair
vmc03430
Mismatch repair
vmc03440
Homologous recombination
vmc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128817375 (RPA1)
03420 Nucleotide excision repair
128817375 (RPA1)
03430 Mismatch repair
128817375 (RPA1)
03440 Homologous recombination
128817375 (RPA1)
03460 Fanconi anemia pathway
128817375 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vmc03000
]
128817375 (RPA1)
03032 DNA replication proteins [BR:
vmc03032
]
128817375 (RPA1)
03400 DNA repair and recombination proteins [BR:
vmc03400
]
128817375 (RPA1)
Transcription factors [BR:
vmc03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
128817375 (RPA1)
DNA replication proteins [BR:
vmc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
128817375 (RPA1)
DNA repair and recombination proteins [BR:
vmc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
128817375 (RPA1)
MMR (mismatch excision repair)
128817375 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
128817375 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
CATSPERD-E_C
DUF4939
Motif
Other DBs
NCBI-GeneID:
128817375
NCBI-ProteinID:
XP_053851818
LinkDB
All DBs
Position
20:6684279..6707212
Genome browser
AA seq
613 aa
AA seq
DB search
MSVRLSEGAIAAIMQGEEVSKPVLQVINTRAIATGTGPPRYRVLMSDGVNTLSSFMLATQ
LNSLVEEERLSARCICQVNRFIVNSLKDGRRVVILMDVNVLQTADQVGGPIGNPQPYNEG
QGQRSAAPAGNPAASKPQQQNGNLSGAGPAAPKYHAPSNQFGKASAPSALKTPGGSQVKV
VPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEGKLFSIELVDESGEIRATAFNDQADK
FFPLIELNKVYYFTKGNLKTANKQYTAVKNDYEITFTNETSVVPCDDAQHLPSVQFDFVS
ISDLENTPKDSIVDVIGICKSYEDVTKITVKANNREVSKRNVHLMDTSGKLVTATLWGNE
AEQFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLEC
ASISDVRGGPAAGANTNWKTLFEAKSENLGQGDKADYFSCVGTIVHLRKENCMYQACPSQ
DCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLEYQWVTCFQDTAEFILGQNA
AFLGELKEKNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAMDVKPVNYREYSK
RLIANIRRNAQLG
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgcggctgagcgagggggccatcgcggccataatgcaaggggaggaagtctcc
aagcccgtgctgcaagtcatcaatacacgggctattgccacaggaacggggcccccacgt
taccgagtgctgatgagtgatggggtgaacaccctctcctcattcatgttggcaacacag
ctgaactccctggtggaagaggaacgcttgtcagcccggtgtatttgccaggttaacaga
ttcattgtcaacagcctgaaagatggaaggagagtggtgatcctgatggatgtgaatgtc
ctgcaaactgctgatcaggttggtgggcctattggcaatccccagccatacaatgaggga
caagggcaacgttctgcagctccagcaggaaacccagcagccagcaaaccacagcagcaa
aatggcaatttgtctggagcaggtcctgctgctcccaagtaccacgctccctccaaccag
tttggaaaagcgagtgctcccagtgccctgaagacacctggggggtctcaggtcaaagtg
gtgccgattgccagcttgaatccgtaccagtccaagtggaccatttgtgctcgtgttacc
caaaaaggtcagatccgcacgtggagcaactctcgtggggaaggaaagctcttttccata
gagctggttgatgaaagtggtgagattagagctactgcattcaacgatcaagcagacaag
ttctttccactcattgaattgaacaaggtatattattttaccaaaggcaatttgaagact
gctaacaagcaatatacagctgttaagaatgactatgagattacattcactaatgagact
tcagttgtgccctgtgatgatgcccagcatcttccatctgttcagtttgattttgtatcc
atctctgacttggagaacacacccaaagactcgattgttgatgtaattggaatttgcaag
agctacgaagatgtcactaaaattacagtgaaagctaacaatagggaggtttcaaagagg
aatgtgcatctgatggatacatcagggaaactggtgacagctacactgtggggaaatgag
gctgaacagtttgatggttccagacaacctgtgattgccatcaaaggagcccgtgtctct
gactttggtggcagaagcctgtctgtcctgtcctccagcacagttgtcatcaaccctgat
agcccagaggctttcaagctccgaggatggtttgactccgaggggcagcttctggaatgt
gcctccatctctgatgtgaggggtgggccagcagctggagcaaataccaactggaaaact
ttgtttgaagccaaatctgagaacttgggacaaggagataaggcagattattttagctgt
gtgggcacaattgtacatctgcgcaaagagaactgcatgtaccaggcatgtccctctcag
gattgcaacaagaaagtgatagaccagcaaaacggactttaccgctgcgagaagtgtgac
cgcgaattccccaacttcaagtaccgcctgatgctgctggtgaccattgcagactgtctg
gagtatcaatgggtgacttgttttcaagacacagcagaattcattcttgggcaaaatgca
gctttcctgggagaactgaaggaaaagaacgagcaggcttttgaagaagtgttccaaaat
gcaaacttcaacacctatgagttcaggatccgggtgaaactggagacttacaatgatgaa
tctcgtattaaggccacagcaatggacgtcaaacccgtgaactacagagaatacagcaag
agattgattgccaacatcaggagaaatgctcagctgggatga
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