Vidua macroura (Pin-tailed whydah): 128819738
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Entry
128819738 CDS
T11570
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
vmc
Vidua macroura (Pin-tailed whydah)
Pathway
vmc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128819738 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vmc03041
]
128819738 (DDX42)
Enzymes [BR:
vmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128819738 (DDX42)
Spliceosome [BR:
vmc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128819738 (DDX42)
Complex B
128819738 (DDX42)
Complex C
U2 SnRNP specific factors
128819738 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
SBSN_GxHH_rpt
Motif
Other DBs
NCBI-GeneID:
128819738
NCBI-ProteinID:
XP_053855983
LinkDB
All DBs
Position
27:1702824..1719010
Genome browser
AA seq
1106 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGSAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPESPIAATAAAKGVPGFTSTGSLSSVPT
FPSAGAQGFNSTNASTNSREGGGGIVRERYNDNRNSRHGEAPRRGEGGGGRGEGGGGRGE
GGGGRGEGGGGRGEGGGRGEGGGGRGEGGGRGEGGGGRFSEGQRFSEGQRFNDGQRYNEA
QRFSEGQRFSEGQRFNEGQRFNEGQRFNEGQRFNEGQRFNDGQRFSEGQRFNDGQRYNEG
QRFNEGQRFNEGQRFNDGQRFNEGQRFNDGQRFNEGQRFNDGQRYNEGQRYNEGQRFNDG
QRHSEGGGRHSDPSRHGDVHRHSEGRHFTDLPGGNRNNGDSRNSTEGRNSESRNGENRKE
ANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaagagaggctttgggtttggtggctttgcc
ataacacctggcaagaaagaggagcccaagctgtctcagcagtcccacagtgcttttggc
agcgccggctcctcggcagcatttgcgaaatcggggcctcctcagctgccttccttctac
aaaattgggtcaaagagagccaattttgatgaggagaatgcgtactttgaggatgaagag
gaagattccagcaatgtggaattgccctacattcctgcagagaattcccccacccggcag
cagttccattccaaatcagcggactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagactcgaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcgtat
tttcgctacatggctgagaaccccactgctggtgtggtacaagaggaggaagaggataac
ctggagtatgatagtgatgggaatccaattgcaccgtccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatacccaccatttgagaaaaatttctatgatgag
catgaggagatcaccagcctgaccccgcagcaagtggtggagttacggcataagctgaat
ctccgggtctccggggctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatacaa
tgtcagggtgttccagtggcactaagtggcagagacatgattgggatagccaagactgga
agtgggaaaacagctgccttcatctggccaatgctgatccacatcatggatcagaaggag
cttgagccaggggatggtcccattgcagtgatcgtctgcccgaccagggagctctgccag
cagatccactccgagtgcaagcgctttggcaaggcctataacctgcgctccgtggccgtg
tacggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagatcgtg
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaagctacaaacctgcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatggggtttgaatatcag
gtcagatcaatcgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccacg
ttccgtaagaagattgagaaattggctcgggatattctgatcgacccaattcgggttgtg
caaggagacattggagaggccaatgaagatgtcactcagattgtggagattttcccctct
gggcccagcaagtggaactggctgacgcggcgcctcgtggagttcacgtcctcggggagt
gtcctcctcttcgtcaccaagaaagccaacgcagaggagctggccaataacctcaagcag
gaggatcataacctggggctgcttcatggggacatggaccagagcgagaggaataaagtc
atttcggaatttaagaaaaaggggatccccatcctggtagctactgatgtggcagctcga
gggttggatatcccttccatcaagactgtcatcaactacgacgtggctcgggacatcgac
acccacacgcaccggatcggccgcaccggccgcgcgggggagaagggagtggcctacact
ctgctgacccccaaggacagcaacttcgctggtgacctcgtcagaaacctggagggtgcc
aaccagcacgtgtccaaagagctgctggatttggcaatgcagaatccatggttccggaaa
tcccgttttaaaggggggaagggcaagaagctgaatattggtggaggtggcttgggatac
cgtgaacgccccgggctgggctcagaaaatactgaccgtggaaacaacaacagtgtgatg
agcaactatgaggcctacaagccatccacaggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcacttcgttgctgcaagtttaaataaccaa
aagactgggagctctgctgctggtgccagtggctggaccagtgccgggagcctgaactcc
gtcccgacgagttcagcgcagcaaaacgccgccaatcccgagagccccatcgcagccacc
gcggcagcgaagggggtcccgggcttcaccagcacgggcagcttgagcagcgtgcccacc
ttcccgagcgccggagcacagggcttcaacagcacaaacgccagcaccaacagccgagag
ggcggcggcggcattgtcagagaacggtacaacgacaaccggaacagtcggcacggcgag
gccccgcggcgaggggaaggcggcggcggccgaggggaaggcggcggtggccgaggggag
ggcggtggtggccgaggggagggcggtggtggccgaggggagggcggtggccgaggggag
ggcggtggtggccgaggggagggcggtggccgaggggagggcggtggtggccgcttcagc
gagggccagcgcttcagtgagggccagcgcttcaatgatggccaacgctacaatgaggcc
cagcgcttcagcgagggccagcgcttcagcgagggccaacgtttcaacgagggccaacgt
ttcaacgagggccaacgttttaacgagggccaacgttttaacgagggccagcgctttaac
gatggccaacgcttcagcgagggccagcgtttcaacgatggccaacgctacaatgagggc
cagcgcttcaacgagggtcagcgtttcaacgagggccaacgctttaatgatggccaacgc
ttcaacgagggccagcgcttcaacgatggccaacgcttcaacgagggccagcgttttaac
gatggccaacgctacaatgagggccaacgttacaacgagggtcagcgcttcaacgacggc
cagcgccacagcgaaggcggtggccggcacagtgacccctcccggcacggcgacgtccat
cgccacagcgagggccggcacttcaccgacttgccgggcggcaaccgcaacaacggcgac
agcaggaacagcaccgaggggaggaacagcgagagcaggaatggagagaacaggaaggag
gccaacagccgagacaacaagacagatggttttgctgtcccagagcccccaaaacggaag
aagagccggtgggacagttaa
DBGET
integrated database retrieval system
