Vidua macroura (Pin-tailed whydah): 128820036
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Entry
128820036 CDS
T11570
Symbol
USP39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128820036 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vmc03041
]
128820036 (USP39)
Spliceosome [BR:
vmc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
128820036 (USP39)
SSDB
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Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
128820036
NCBI-ProteinID:
XP_053856484
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All DBs
Position
28:3969307..3974580
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AA seq
587 aa
AA seq
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MSSRGRRDRDPREPRELRGASAAGPARGSSRSRRDADGERQRGRRDAERERTRREAAEAL
PVDLARVKREPGTGSGSGVWGGSGSAGPAAPVRVKREREPDGDSDPEPEPAVRYGRFDPE
DQRSRHCPYLDTINKSVLDFDFEKLCSISLSHINVYACLVCGKYFQGRGLKSHAYIHSVQ
LSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTAQHIAHLDKQAKLSRAYDGT
TYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEENYRRIQRPPGDIMFLLVQRFG
ELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKNFQITKQGDGVEFLSWFLNALHTALGGTK
RKKKTIVTDVFQGSMRIFTKKLPHPDLPAEEKAQLLQNSEYQERMVESTFLYLTLDLPTA
PLYKDEKEQLIIPQVPLFSILAKFNGSTEKEYKTYKENFLKRFQLTRLPPYLIFCIKRFT
KNNFFVEKNPTIVNFPITNVDLREYLSEEVQAVHSHTTYDLIANIVHDGKPSEGSYRIHV
LHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRREEDETNQQGA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagccgcgggaggcgggaccgcgacccccgggagccccgggagctccgcggggcc
tccgccgccggccccgcccgcggctcctcccgcagccgccgcgacgccgacggcgagcgg
cagcggggcaggcgagacgcggagcgggagcgcacgcggcgggaggcggcggaggcgctg
ccggtggatctcgcacgcgtcaagcgggaaccgggcaccggcagcggcagcggcgtctgg
gggggctccggcagcgccggccccgccgcgcccgtgcgggtgaagcgggagcgggagccc
gatggagactccgaccctgagcccgagcccgccgtgcgctacgggcgcttcgaccccgag
gaccagcgtagccggcactgcccctacctggacaccatcaacaagagtgttctggacttc
gactttgagaagctctgctccatctccctgtcccacatcaacgtctacgcctgcctcgtc
tgtgggaagtacttccagggccgcgggctgaagtcgcacgcctacatccacagcgtgcag
ctgagccaccacgtgttcctcaacctgcacacgctcaagttctactgcctgcctgacaac
tacgagatcattgactcctccctcgaggacatcacgtacgtgctcaagcccaccttcaca
gcccagcacatcgcccacctggacaaacaggccaagctgtcccgggcctacgatggcacc
acgtacctgcctggcatcgtggggctcaacaacatcaaggccaacgactacgccaacgct
gtgctccaggccctgtccaatgtgcctcccctgaggaattacttcctggaggaggagaac
taccggcgcatccagcgcccacccggggacatcatgttcctgctggtgcagcgcttcggg
gagctcatgaggaagctctggaacccccggaacttcaaggcacatgtgtcaccccacgag
atgctgcaggccgtggtgctctgcagcaagaaaaacttccagatcaccaagcagggggat
ggggtggagttcctgtcctggttcctgaacgcgctgcacacggcgctgggcggcaccaag
aggaagaagaagaccatcgtcaccgacgtgttccagggctccatgcgcatcttcaccaag
aagctgccacaccctgacctgcctgccgaggagaaggcgcagctgctgcagaacagcgag
taccaggagcgcatggtggagtccacgttcctgtacctgaccctggacctgcccacggcg
ccgctctacaaggacgagaaggagcagctcatcatcccccaggtgcccctgttcagcatc
ctggccaagttcaacggcagcaccgagaaagagtacaagacctacaaggagaacttcctg
aagcggttccagctgacacgcctgcccccctacctcatcttctgcatcaagcgcttcacc
aagaacaacttcttcgtggagaagaaccccaccatcgtcaacttccccatcacgaacgtg
gacctgcgggaatacctgtcagaggaggtgcaggccgtgcactcccacaccacctacgac
ctcatcgccaacatcgtacacgacgggaaaccctcggagggctcctaccgcatccatgtc
ctgcaccatggcacagggaagtggtacgagctgcaggacctgcaggtgactgacatcctg
ccccagatgatcaccctgtccgaggcctacatccagatctggaagcgacgtgaggaggat
gagacgaaccaacaaggcgcctga
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