Vidua macroura (Pin-tailed whydah): 128821111
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Entry
128821111 CDS
T11570
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
128821111 (SCN8A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
vmc04040
]
128821111 (SCN8A)
Ion channels [BR:
vmc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
128821111 (SCN8A)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
ATP-synt_B
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
128821111
NCBI-ProteinID:
XP_053857987
LinkDB
All DBs
Position
34:398460..472599
Genome browser
AA seq
1978 aa
AA seq
DB search
MAARLLAPPGPESFKPFTPESLANIEKHIAELKKKQRSKQDSSHRDDDEDSKPKPNSDLE
AGKNLPFIYGDIPKGLVAVPLEDFDPYYMTQKTFVVLNRGKTLFRFSATPALYILSPFNL
FRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIAR
GFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVIWPINVNETFLDNGSKGF
DWEEYTNNMSNFYIIPGAPDPLLCGNSSDAGQCPEGYTCMKAGRNPNYGYTSFDTFSWAF
LALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMVTSAGTVSEDAVEDDGGGRMSRSSSEISK
LSSKSAKERRNRRKKRKDKELSEGDEKCDNEKVFKSESEDGMRRKAFRLPDNRLGRKFSI
MNQSLLSIPGSPFLSRHNSKSSIFSYKGRFRDPGSENEFADDEHSTVEESEGRRDSLFIP
IRGRDRRSSYSGYSGYSQGSRSSRIFPTLRRSIKRNSTVDCNGVVSLIGGPPSSMPGGRI
LPEGTTEIEIRKKPGGSLLVSMDQVNASYGRKDRTNSVMTGLTNTLVEELEESQRKCPPC
WYKFANTFLIWECHPYWMKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPEFE
HVLSVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELSLADVEGLSV
LRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYK
ECVCKINPECELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMV
IGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGIAWTKAKVREFMQAH
FKQREADEVKPLDELYDKKVNCIANHTGADINRDIDFLKNGNGTTSGIGSSVEKYIIDED
HMSFINNPNLTVRVPIAVGESDFENLNTEDFSSDTDPDGSKEKLDETSSSEGSTIDIKPE
VEEVPVEAPEEYLDPDACFTEGCMQRCKCCQVNIEEGLGKSWWTLRKTCFLIVEHNWFET
FIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWCAYGFVKFFTN
AWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVG
AIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETAEHRFDIEVVNNKTDCEALMPP
NSTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKQEEQPKYEDNIYMYI
YFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQK
PIPRPLNRIQGAVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMEDILYWINFVFV
IFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFVSPTLFRVIRLA
RIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAGI
DDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCDLDKEHPGSGFKGDCGNPSVG
IFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQF
IEYSKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGEL
DILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVIQRAYRARLARRGFIGRRPAS
TKLENGGANREKKEGTPSTASLPSYDSVTKPEKEKQQRAEEGRREKAKRQKDARVAKC
NT seq
5937 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcggctgctcgcaccaccaggccccgagagttttaaacccttcactccggag
tccctggccaacatcgagaaacacatcgcggagctgaagaagaagcagcgctccaagcag
gacagcagccaccgggatgacgacgaagacagcaaaccaaaaccaaacagtgaccttgag
gcgggcaagaatttgcctttcatctacggggacatccctaaagggctggttgctgtgccc
ctggaggactttgacccttattatatgacccagaaaacctttgtagtactaaacagaggg
aaaacactcttccgatttagtgccacacctgccttgtacattttaagtccttttaatctg
tttagaagaatagctattaaaattttgatacattcggtgttcagcatgatcatcatgtgc
accatcctgaccaactgcgtgttcatgacgttcagtaacccgcccgagtggtccaagaac
gtggagtacacattcaccgggatttatacgtttgaatcactcgtgaaaatcattgccaga
ggtttctgtatagatggcttcaccttcctgagggacccctggaactggctggatttcagc
gtcatcatgatggcatatgtcacagagtttgtggaccttgggaatgtctcagcattgaga
actttcagagttctccgagctttgaaaactatctctgtaattccaggcttgaagaccatc
gtgggtgccctgatccagtctgtgaagaagctgtcggatgtgatgatcctgacagttttc
tgtctcagtgtctttgccctcattgggctccagctgttcatgggcaatttaaggaacaaa
tgtgtgatttggccaattaatgtgaacgagaccttcctggataatggctccaagggcttc
gactgggaggaatacaccaacaatatgtcaaatttttacatcattcctggtgcccccgac
cctttgctctgtggtaacagctccgatgcaggccaatgtccagagggatacacgtgcatg
aaggcaggacggaaccccaactacggctacacgagctttgacaccttcagctgggctttc
ctggctttatttcgccttatgactcaggacttttgggaaaacttgtatcaattaacttta
cgagcggcaggaaaaacctacatgatcttctttgtgctggtgatctttgtgggatccttc
tacctggtgaatctgattctggctgtggtggccatggcctacgaggagcagaaccaggcg
accctggaggaggcagagcagaaggaggcagaattcaaggccatgttggaacaattgaaa
aagcagcaggaagaagcacaggctgctgccatggtcacctcggcagggacggtgtctgaa
gatgctgtggaggatgatggtggggggaggatgtctcggagctcctcggagatttccaaa
ctcagctccaagagtgccaaggagcgccggaacaggaggaagaagaggaaggacaaggag
ctgtcggaaggagatgagaagtgtgacaatgagaaggtgttcaagtcagaatctgaggat
ggcatgaggaggaaagcgttcaggctgccggataacaggctgggaaggaaattttccatc
atgaaccagtctctcctcagcatcccgggctcccctttcctctcgcgccacaacagcaag
agcagcatcttcagctacaaggggcgcttccgcgacccgggctcggagaacgagttcgcc
gacgacgagcacagcacggtggaggagagcgagggcaggagggactcgctcttcatcccc
atccgcggccgcgaccggcgcagcagctacagcggctacagcggctacagccagggcagc
cgctcctcgcgcatcttccccacgctgcgccgcagcatcaagaggaacagcaccgtggac
tgcaacggcgtcgtgtccctcatcggagggccgccgtccagcatgcctggtggccgcatc
ctgcccgagggtaccactgaaattgaaatcaggaagaagcctggtgggtctctcttggtc
tcaatggatcaggtgaacgcgtcctatggaaggaaggatcggaccaacagtgtcatgact
gggttgaccaacacccttgttgaggagctggaagagtcccagaggaagtgtcccccttgc
tggtacaaatttgccaataccttcctgatctgggagtgccacccatactggatgaagctg
aaggagatcgtgaacttaattgtcatggatccttttgttgacttggccatcaccatctgc
atcgtgctgaacacgctgttcatggccatggagcaccaccccatgacccccgagttcgag
cacgtgctctctgtaggaaatctggttttcactgggattttcacagcagaaatgttcctg
aagctcattgcaatggatccatactattattttcaagaaggctggaacatctttgatggg
tttattgtctccctgagcttaatggagctgagtctggcagatgtggagggactttccgtg
ctgcgatctttccgactgctgagagtcttcaaactggccaaatcctggcccactctgaac
atgctgataaaaatcattggtaactcagtgggtgccttggggaatttgaccttggtgctg
gccatcatcgtgttcatcttcgccgtggtgggaatgcagctcttcggcaaaagctacaag
gagtgtgtctgcaagatcaatccggagtgtgagctaccccgctggcacatgcacgatttc
ttccactccttccttattgtcttccgtgtgttgtgtggggagtggattgagaccatgtgg
gattgtatggaagtggcaggacaggccatgtgcttgattgtcttcatgatggtcatggtc
atcggcaacttagtggtgctgaacctgttcttggccttgctgctgagctccttcagcgca
gacaacctggcggccacggacgacgacggcgagatgaacaacctgcagatctcggtgatc
cgcatcaagaagggcattgcctggaccaaggccaaggtcagggagttcatgcaggcccac
ttcaagcagagagaggcggacgaggtgaagcccttggacgagctgtacgacaagaaggtg
aactgcatcgccaaccacaccggggccgacatcaaccgcgacatcgatttcctcaagaac
ggcaacggcaccaccagcggcatcgggagcagcgtggagaagtacatcatcgacgaggac
cacatgtccttcatcaacaaccccaacctgaccgtgcgcgtccccatcgccgtcggcgag
tccgacttcgagaacctcaacacggaggacttcagcagcgacacggatcccgacggcagc
aaggagaaactcgacgagaccagctcctctgagggcagcaccatcgatatcaagcctgaa
gtggaagaagtgcccgtggaggcaccagaggagtacctggaccccgatgcctgtttcaca
gaaggttgcatgcagcgctgcaagtgttgccaggtcaatattgaggaggggctgggaaag
tcgtggtggaccttgaggaaaacgtgtttcctaattgtggagcacaactggtttgagact
ttcatcatcttcatgatcctcctgagcagtggggccctggcgtttgaggacatctacatc
gagcagaggaaaaccatcaggaccatcctggagtacgccgacaaggtcttcacttacatt
ttcatcctggagatgctgctcaagtggtgtgcctatggctttgtcaagttcttcaccaac
gcctggtgctggctggatttcctcatcgtggctgtctctttagtcagccttatagctaat
gccctgggctactcggaactaggtgccataaaatcccttaggaccctaagagccttgagg
cctttaagagcgttgtcccgatttgaggggatgagggtggttgtcaatgccttggttggc
gctatcccttccattatgaatgtcttgttggtctgccttatcttctggctgattttcagc
attatgggggttaacctgtttgccgggaaatatcattactgctttaatgaaacagctgag
catcgctttgacatagaggttgttaacaacaagacagactgcgaggctctgatgccaccc
aactccacggagatccgatggaagaacgtgaaaattaactttgacaacgttggggcagga
tatctggctctgctgcaagttgctacattcaagggctggatggacatcatgtatgcagct
gtagattccagaaagcaagaagagcagcccaagtacgaggacaacatttacatgtacatt
tattttgttatcttcatcatcttcggttcctttttcaccctgaacctcttcattggtgtc
atcatcgacaacttcaatcaacaaaagaaaaagtttggaggtcaagatattttcatgaca
gaagaacaaaagaagtactacaatgccatgaaaaaactgggctcaaagaagcctcaaaaa
cccattccccgacctctgaaccgcatccaaggagccgtcttcgactttgtcacccagcaa
gccttcgacatcgtcatcatgatgctcatctgcctcaacatggtgaccatgatggtggag
acagacacgcagagcaagcagatggaggacatcctttactggatcaactttgtgtttgtc
atctttttcacctgtgagtgtgtgctgaagatgttcgccttgaggcactactacttcacc
atcgggtggaacatctttgacttcgtggttgtgattctgtccatcgtggggatgttcctg
gctgaaatcatcgagaagtacttcgtgtcacccaccctgttccgagtgatccgcctggct
cgcatcggccgcatcctgcgcctgatcaagggagccaaagggatccgcacgctgcttttt
gccttaatgatgtccctgcctgccttgttcaacatcggcctcctgctcttcctggtcatg
ttcatcttctccatcttcggcatgtccaacttcgcctacgtcaagcacgaggccggcata
gacgacatgttcaactttgagacctttggcaacagcatgatctgcttgttccagatcacc
acctcggccggctgggacgggctcctgctgcccatcctgaaccggccgccagactgcgac
ctggacaaggagcacccgggcagcggcttcaagggggactgcgggaacccctcggtgggg
atattcttcttcgtgagctacatcatcatctccttcctcatcgtggtcaacatgtacatc
gccatcatcctggagaacttcagcgtggcgacggaggagagcgcggatccgctcagcgag
gacgacttcgagacgttctacgagatctgggagaagttcgaccccgacgccacgcagttc
atcgagtacagcaagctggcggacttcgccgacgccctggagcatcccctgcgcgtcccg
aaacccaacaccatcgaactcatcgccatggacctgcctatggtaagtggggacaggatc
cactgtttggacatcctgtttgccttcaccaaacgtgtcctgggggacagcggggagctg
gatatcctgagacagcagatggaggagaggtttgtggcttccaacccttccaaagtgtct
tacgagcccatcaccaccacgctgcggcgcaagcaggaggaggtgtcggcggtggtgatc
cagagggcttacagggctcgtttggcacgacggggcttcatcggccgaaggcctgccagc
accaaactggagaacgggggagcaaacagggagaaaaaggagggcaccccatccacggcg
tccctgccgtcctacgacagcgtcaccaaacccgagaaggagaaacagcagcgggcggag
gagggcaggagggaaaaggcaaagagacaaaaagacgccagggtggccaagtgttga
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