Vidua macroura (Pin-tailed whydah): 128821123
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Entry
128821123 CDS
T11570
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc04510
Focal adhesion
vmc04512
ECM-receptor interaction
vmc04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128821123
04518 Integrin signaling
128821123
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128821123
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
vmc00536
]
128821123
Glycosaminoglycan binding proteins [BR:
vmc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128821123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
128821123
NCBI-ProteinID:
XP_053858004
LinkDB
All DBs
Position
34:complement(181174..198562)
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AA seq
1279 aa
AA seq
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MGSPELQEIPAPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGP
PGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGL
PGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGA
QGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGP
LGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPXPAGEEGKRGARGEPGAAGPLGPPGE
RGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGD
AGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL
RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGE
AGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGL
QGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGP
PGPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGP
SGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGP
KGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQ
RGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGSDGPPGR
DGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGM
PGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGP
VGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQ
PEKGPDPGRYMRADEAAPGLRPHDAEVDATLKALNNQIESIRSPEGSRKNPARTCRDIKL
CHPDWKSGDYWIDPNQGCTLDAIKVFCNMATGETCVYPSPGSIPRKNWWSSKAKEKKHVW
FAETINGGFHFSYGAEDLAPNTANIQMTFLRLLSTEGSQNVTYHCRNSVAYLDEESGSLR
KALLIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGRTVIEYRSQKTSRLPIVDIAPM
DIGGPEQEFGVDLGPVCFL
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggggagcccggaactccaggaaatcccggcccccccgggcccccccggacccccggga
ccccccggcctgggtgggaacttcgcggctcagatggccgggggcttcgacgagaaggct
ggaggggctcagatgggcgtcatgcagggacccatgggccccatgggaccccgcggcccc
cccggcccccagggcgctcgtggcttccctgggacccccggactgcctggagtcaaaggc
caccggggctaccccggcctggacggcgccaagggagaggcgggagcacctggagccaag
ggcgagtccggctccccgggcgagaacggctcccccggccccatgggtccccgcgggctg
cccggagagcgaggacgcccgggcccctcgggcgctgcgggcgctcgtggcaacgacggc
ctcccgggcccggccggaccccccggccccgtcggccccgcaggagcccccggcttcccc
ggcgcccccggctccaagggtgaagcgggtcccaccggagcgcgaggacccgagggtgcc
caggggccccgcggggaatccgggacccccggctcgcccggtcccgccggcgcacccggg
aacccagggaccgatggcatccccggagcgaagggatcggcgggcgctccaggcatcgcc
ggcgctccaggattccccggcccccgcggcccacccggaccccagggagccaccggcccg
ctgggccccaagggacagacgggcgagcccggcatcgcgggattcaaaggcgagcaggga
cccaagggagagacgggccccgcaggaccccagggtgcccgaccggccggggaggaaggg
aagagaggagcccgcggagaacccggagctgccggacctttggggccgcctggagagagg
ggagctcctggcaaccgcggcttccccgggcaggacgggctggccggccccaagggggcc
ccgggcgagcgcggccccgctggcctggccggccccaaaggagccaccggcgaccccgga
cgccccggagagcccggcctgcctggagccaggggtctcacaggtcgccccggggacgct
gggccccaaggcaaagtcggccccacaggtgcccccggcgaggacggacgccccggaccc
cccggcccccagggggctcggggccaacctggcgttatggggttccctggtcccaaaggt
gccaatggcgagcctggaaaagccggtgaaaaaggacttcctggagcaccggggctgagg
ggacttcctggcaaggacggagagaccggagccgccggacccccagggcctgctggcccg
gcaggggagaggggagagcaaggagcccccggcccctctggcttccaggggctgccaggg
ccaccaggtccccccggtgagagcggcaaacccggagatcagggcgttcctggagaagcc
ggagcccccgggcttgtgggtcccaggggcgagcgcggcttccccggcgagcgcggctct
cccggcgcccagggcctgcaggggccccgcggcctccccggcacccccggcaccgacgga
cccaagggtgccaccggccccgccggccccaacggcgcccagggacccccggggctgcag
gggatgcccggggagagaggagccgccggcatcgccggtcccaagggggacaggggagac
gttggagagaagggacccgagggagcccccggaaaggacggagctcgcggtctgaccggt
cccatcggcccccctggccccgctggccccaacggcgagaagggcgagtctggccccccc
ggcccgtccggagccgccggtgcccgcggtgccccgggagagcgcggagagcccggagcc
cccggccctgccggattcgccggacccccgggcgccgatggccagcccggagccaagggc
gagcagggggagcccggccagaagggtgacgccggagcccccggacctcagggtccctcc
ggggctcctggaccgcagggtcccacaggtgtcaccggtcccaaaggagcccggggcgct
cagggacccccgggagccaccggattccccggagccgccggacgcgtcggaccccccggc
cccaacggtaaccccggcccgcccggaccccccggctccgcgggcaaggacggccccaag
ggcgcccggggcgacgcgggacccccgggccgagcgggggacccggggctgcagggcccc
gccggcccccccggcgagaagggcgagcccggcgaggacggccccgcgggtccggacggt
ccccccggtccccaggggctggcaggacagcgcggcatcgtggggctgccggggcagcgc
ggcgagcgcggattcccggggctgcccggaccttcgggagagcctggaaaacagggagca
cctggatctgccggtgaccggggaccccccgggcccgtgggaccccccgggctgacgggg
ccggccggagagcccggaagggagggaaatcccggctctgatggacccccaggcagggat
ggggcagccggagtgaagggcgatcgtggcgagaccggccccgtgggtgctcccggcgct
cccggcgctcccggcgctcctggccctgtgggacccactggaaaacagggagacagagga
gagacgggtgctcagggtcccatgggtccctccggccccgctggcgcccgggggatgccg
ggtccccaggggccgcgcggtgacaaaggcgaggcgggcgaggctggcgagcgcggcctg
aaggggcaccggggcttcaccgggctccaggggctgcccgggccccccggtccttctgga
gaccagggcgctgccgggcctgcgggtccctccgggccaaggggtccccccggccccgtg
ggcccctcgggcaaggacggctccaatgggatgcccggacccatcggcccccctgggccc
cgcgggaggagcggcgagcccggcccggcgggcccccccgggaaccccggcccgcccggt
ccccccgggccccccggcaccggcatcgacatgtcggcgttcgcggggctggggcagccc
gagaagggccccgaccccgggcgctacatgcgggcagacgaggcggcgccggggctgcgg
ccgcacgacgccgaggtggacgccaccctcaaggccctcaacaaccagatcgagagcatc
cgcagccccgagggctcccgcaagaacccggccaggacctgccgagacatcaaactctgc
caccccgactggaagagcggcgattactggatcgaccccaaccagggctgcacgctggac
gccatcaaggtcttctgcaacatggccacgggggagacgtgcgtgtaccccagccccggc
agcatccccaggaagaactggtggagcagcaaagccaaggagaagaagcacgtctggttc
gccgagaccatcaacggcggcttccacttcagctacggcgctgaggacctggcgcccaac
acggccaacatccagatgaccttcctgaggctgctgtccaccgagggctcccagaacgtc
acctaccactgccgcaacagcgtggcctacctggacgaggagtcgggcagcctgaggaag
gcgctgctcatccagggctccaacgacgtcgagatccgcgccgagggcaacagcaggttc
acctacagcgtgctggaggacggctgcacgaaacacactgggaagtggggcaggactgtc
atcgagtaccgctcgcagaagacctcgcgcctgcccatcgtggacattgcacctatggac
attgggggacccgagcaggagtttggggtcgacctcggccccgtctgcttcttgtaa
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