Vidua macroura (Pin-tailed whydah): 128822589
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Entry
128822589 CDS
T11570
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
vmc Vidua macroura (Pin-tailed whydah)
Pathway
vmc04382
Cornified envelope formation
vmc04510
Focal adhesion
vmc04512
ECM-receptor interaction
vmc04518
Integrin signaling
vmc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
vmc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128822589 (COL4A1)
04518 Integrin signaling
128822589 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128822589 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128822589 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128822589 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vmc04147
]
128822589 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
vmc00536
]
128822589 (COL4A1)
Exosome [BR:
vmc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128822589 (COL4A1)
Glycosaminoglycan binding proteins [BR:
vmc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128822589 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128822589
NCBI-ProteinID:
XP_053860329
LinkDB
All DBs
Position
2:complement(24409395..24529657)
Genome browser
AA seq
1669 aa
AA seq
DB search
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGPPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVVGLLAPGVLKGEKGFPGQPGLPGPPGAS
GFQGPMGPMGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIKGEKGDPGEKGERGTPGLPGSGFKGDKGEPGQPGPRGKPGKDGEPGLKGEPGL
PGGFGIPGRPGEPGTKGDKGERGYPGPPGRMIDAGPVDTFGEKGDPGVSGLPGLKGQKGE
KGFPGAQGIPGPPGRPLPDRVGSPGVPGERGEKGEKGSPGFPSPGIPGRDGFPGPPGLPG
PPGPPGKTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGDKGEACALCDKVGPPGLPG
PQGPPGPAGFPGQAGFKGDRGLPGLDGLPGVPGPPGTPGLMGSPGPKGEPGDFTYDSILK
GEKGDPGFPGQPGIPGREGRPGKDGFPGPQGPKGAAGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGTAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGSPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGSQGPPGAPGLGPPGLPGPAGQPGPQGPPGFPGVKGERGFPGVPGLDMPG
PKGDKGSPGQPGVPGSVGLPGLPGPQGAVGLKGSTGPKGEMGVMGTPGLPGTPGPVGDRG
FPGEKGSQGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDNMDMVSLKGQKGDQGEKGDHG
AAGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGVPGQKGSVGEMGLPG
TPGEKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGAPGEKGEPGRTGSPGVSGD
KGEKGSAGIPGMPGAPGPKGSPGMAGFPGNPGRHGEKGEKGLPGLSGIPGLKGEPGEPGV
PGPAGAIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGLPGVPGPMGPPGPPG
LKGAKGEQGSNGWPGTPGGPGMKGDPGFQGLPGSPGLPGDIGPKGDLGPPGVPGAPGPKG
TPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLIKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGQPGQKGEAGPFGPPGPRGFPGPPGPDGLPGAMGPPGAP
SVAHGFLVTRHSQTIEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFRKPTPSTLKAGDLRSNVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtccgcc
gcgggatgttccggttgtggaaaatgtgattgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggactacagggtgtgattgggtttcctggaatgcagggacctgaaggt
ccccctgggccaccagggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagtatcaggctttccaggaaacccaggccttcctggcatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccaggtttaccaggactgactggaagtataggacctcca
ggacctcctggaatgaagggagatccaggtgaagtggttggtcttttggctcctggtgtg
ctaaaaggtgaaaaagggtttcctggccaacctggactgcctggtccgcctggagcttca
gggtttcagggaccaatgggaccaatgggccctccaggagagccaggtcccccagggcca
ccaggacttccaggagagaagggctacatgggcttgggctttcagggtcccaaaggtgaa
aagggagaacaaggggtgaggggccctccaggacccccaggaccagcacctcatatgaaa
gaaaaagggagtgaaatcataaagggagaaaagggtgatccaggtgaaaagggcgaacgg
ggaacccctggattgccaggttcaggtttcaaaggagacaagggtgaacctgggcagcct
ggtccacgtggaaagcctggaaaagatggtgaaccaggactgaaaggagaacctggttta
cctggagggtttgggattccaggacgacctggggagcctggcacaaagggtgacaaaggg
gagcgaggttatccaggacctccaggaagaatgatagatgctggaccagtagataccttc
ggtgaaaaaggagaccctggagtttcaggtttgcctggactgaaaggtcaaaaaggtgaa
aaaggcttccctggtgcacaaggaatcccaggacctccaggtcgaccacttccagacagg
gtaggatcgcctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctcctgga
ttcccttcacctggaatccctggaagagatggtttcccaggtccccctgggttgcctggc
ccaccaggacctccaggcaaaaccgatggaattgatcagtgccagcagggagaacctggt
gcaccaggtagtcctggacttccaggaagagatggatttccaggagagatgggagagaaa
ggtgacaaaggtgaagcctgtgccttgtgtgataaagttggacctcctggacttccagga
ccacaagggccgccaggtccagcaggttttccaggacaagcaggtttcaagggtgaccga
ggcttacctggacttgatggccttcctggagtgcctggtccccccggcactccaggactt
atgggcagccctgggccaaaaggagaacctggagattttacttatgattctatcctgaaa
ggcgaaaagggagatcctggtttcccaggacaaccaggcattcctggaagagaaggaaga
ccaggaaaagatggatttccaggtccccagggtccaaaaggagcagcgggtacagctggc
ttgaaaggagaacgtggtccccctggccaacctggattccctggagtgcgtggtgaaaga
ggttttcctggccctcctgggataggtactgcaggattacctggtgaaaaaggagacaga
ggctttgctggaaccccgggtttaccaggacttccaggagcaaagggtgaagcaggacga
actatatcgctccctggacctcctggggcagatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaaggaaatcctgggcttccaggtagacctggcctaccaggagaa
aaaggtgctgttgggcagccaggtatagggttccctggacctccaggtcccaaaggtttc
caaggtcagcctggctcacctggtctgccaggaactccaggaaccccgggtctagatggt
ttgccaggagttccaggtttacaaggccaaaagggtgaacctggtgtaggtctacctggc
cctaagggattgccaggcccccctggcccagctggcattcctggagaaaagggaagtcca
ggactgcctggtttacgtggcgagcaaggctttccgggcatacctggacagcagggattc
agaggtgaccctggtctccccggtctccaaggctcacagggccctccaggtgcaccaggg
ctgggccctccaggattgccaggacctgctgggcagccaggaccccagggaccaccagga
tttcctggagtaaaaggagaaaggggcttccctggtgtcccaggtctagatatgccagga
cctaaaggggataaaggtagcccgggccagccaggagtcccaggctctgtggggttacct
ggtctgccaggtccacagggggctgtaggactgaaaggatcaacaggacccaaaggagaa
atgggagttatgggaactcctggattgccaggaactcctggaccagttggagatcgaggg
tttcctggtgaaaaaggtagccaaggtttcaaaggtgtaattggaccacagggtgatcct
ggtgttaagggagataaaggtgaagctggtctcccaggaaaacctggaacaatagacaac
atggacatggttagcctcaaaggccagaagggagatcaaggagaaaaaggggaccatgga
gcagcaggagaaaaagggctacgtggggattatggagaaccaggaattccagggagagat
ggtgaacctggtactccaggacaaccaggaccaaaaggtgatcaaggccccccagggtac
ccaggggatccaggagttccaggacaaaaaggatcggttggtgaaatgggtctgccagga
acacctggagaaaagggtcttcctggagtaccaggctcaccaggcacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttcca
ggggctcctggtgaaaagggagaaccaggaagaacgggtagtccaggggtatctggagat
aagggtgaaaagggtagtgcaggaattcctggaatgccgggtgccccaggtcccaaagga
tcccctggcatggcaggatttccaggcaaccctggccgccatggagaaaagggtgaaaaa
ggacttcctggcttaagtgggattccaggtttaaaaggagaaccaggtgaacctggtgtt
ccgggtcctgctggtgccattggtcagaagggtgaaccaggttatgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtcttccaggtaggggacttccaggatttcccggt
gcaaagggagataaaggtgcaaaaggcgaagtgggttttccaggatccccaggaagtcca
gggatcccaggcctgaaaggggaaccaggatatgcaggtcctccaggccctaaagggagc
caaggtcttccagggctaccaggcagtgcaattgaaggccctaaaggagacagaggaccc
caaggccaacctggtcttccaggtgtaccgggtccaatggggccaccaggacctccaggt
ctgaaaggggccaagggagagcaagggagcaatggctggccagggactcctgggggtcca
ggaatgaaaggtgatccaggtttccaaggactgccaggtagtcctggtttgccaggagat
atcggtccaaagggtgatcttggacctccaggagttccaggtgctccaggtccaaaagga
actcctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggcccaccaggcccaccaggtccttttcagcttattaaaggggatcctggc
ttacctggacctgtaggaccagttggtctcaagggattcccaggacttccaggtcccaaa
ggacaacaaggggtgacaggaccttcaggtgtacctggaccacctggtagtccagggttt
gatggtcagcctgggcagaaaggagaagctggtccttttggtcccccagggcccagagga
tttcctggtccaccaggccctgatggcttgcccggggctatgggcccacctggggcacca
tctgttgctcatggcttccttgttaccagacacagtcaaaccattgaagaaccatcgtgt
ccgtttggaacaaggctgatttaccacggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaagatctgggcacagcaggaagctgtcttcgtaaatttagtactatg
cctttcttattctgcaatatcaacaacgtctgtaattttgcatcaaggaatgactactcc
tactggctgtctactcctgagcccatgccaatgaatatggctcctatcactggtgacaat
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgtt
cacagtcaaacaattcaaataccaccctgtcctgaaggctggagttcactttggattggt
tactcctttgttatgcacaccagtgctggtgcggagggctctggccaggccctggcatcc
cctggttcctgcctagaggagttccgcagcgctcccttcattgaatgccatggccggggc
acctgcaattactatgcaaatgcttacagcttctggcttgccactatagaaaggaatgag
atgttcaggaaaccgactccctcaaccttgaaagctggggatctacgctcaaatgttagc
cgttgtcaagtctgtatgagaagaacataa
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integrated database retrieval system
