Vibrio mimicus: AL543_03055
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Entry
AL543_03055 CDS
T04381
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL543_03055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmi03019
]
AL543_03055
03009 Ribosome biogenesis [BR:
vmi03009
]
AL543_03055
Enzymes [BR:
vmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL543_03055
Messenger RNA biogenesis [BR:
vmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL543_03055
Ribosome biogenesis [BR:
vmi03009
]
Prokaryotic type
rRNA helicases
AL543_03055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AMG02020
LinkDB
All DBs
Position
1:692594..694585
Genome browser
AA seq
663 aa
AA seq
DB search
MVGNGKARGTLVISSFSGIPMQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVL
LEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHKPQAIVMAPTRELAIQVAAEIKNLGQN
IKGLKVLEIYGGASILDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADE
MLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKV
EQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIP
QSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAG
RKGKAILLVRTNQIRMLRTIERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSL
ERFAELVEKLQASLEIDSTTLAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDD
RRDGDRPARREFGGRDQENHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKL
AQGHTFVQLPKAMSSDVSSKLRKLRIRQKEVGAVVCDFDDFRESRGGARREGGPRRDGGR
RPEGNREGGFRGGREGGREGGRGRGGEGRPFREGERRFERNRSGESSGSYRGERGHSRRR
EEA
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
ttggttggaaatggtaaagcacgtgggaccttggttatttcttcatttagtgggatcccc
atgcaagatactgcaattcaattcagtgatttagcactgaacagcgccatcctttctgcc
ctaaccgaaatgggctttgtatcaccaacacctatccaagcagcagcaattcctgttctg
ctcgaaggtcgtgatgcactgggtaaagcgcaaacaggtacgggtaaaacagcggcattc
tcactgcctctgctgaacaaacttaatctgtctcaacacaagccacaagctatcgttatg
gcgccaacgcgtgagctggcgattcaggtagcggctgagatcaaaaaccttggccaaaac
atcaaaggcctgaaggttcttgaaatctacggtggtgcttcaattcttgatcaaatgcgc
gctctgaaatctggcgctcacattgttgtgggtactccaggccgcgtaaaagatctgatc
actcgtgatcgtctacacctagacgaatgtcatactttcatccttgatgaagcagacgaa
atgctcaaaatgggcttcgttgatgacgtaacttggatcatggagcaagctccagaatca
gcacaacgcgtactgttctctgcaactatgcctccaatggtaaaagagatcgttgagcgt
ttcctacgtaacccagagtgtgttgacgtagccggttctaaccaaactgtggcgaaagtt
gagcagcaatactgggtagtaaaaggtgttgagaaagatgaagcgatggctcgtctgctc
gaaaccgaagaaactgatgcttctatcgtattcgtacgtactcgtcaggatactgagcgt
ctagcggattggctgtgtgcacgtggctttaaagcggcggctctgcacggtgatatccct
cagtctctgcgtgagcgcaccgttgatcatatcaagcaaggtgtgattgatattctggtt
gcgactgatgtagtagcacgtggtcttgacgttccacgtatcactcacgtatttaactac
gacatcccattcgatgttgaatcttacatccaccgtatcggccgtactggtcgtgctgga
cgtaaaggtaaggcgatcctgctggttcgtactaaccaaattcgcatgctgcgcactatc
gagcgtgtaactcgttcttctatggaagagatccaactgccgcatcgcgataaagtggct
gaatctcgtctgactaagctgggtcaagagctggcagcagataaagagttcagctcactg
gagcgtttcgctgagctggttgaaaaactgcaagcgtcactggaaatcgactcaaccaca
ctggctgcgattctgctgaaacgtcagcaaggtaagcgtcctctattctacgtaggtgct
gacccaatgatcgaagcgatggagcgtgaaaaatcacgtcgtcgtgagcgtcgtgatgac
cgccgtgatggtgatcgtcctgctcgccgtgaattcggtggccgcgatcaagagaaccac
gattgggatacttaccaactgcaagttggccgtgatcaaggcgttcaagtgaaagacatc
gtaggtgcattggcgaacgaactgggtctgactaaaggttctatcggtgcgatcaaactg
gctcaaggtcatacgtttgttcagctgccaaaagccatgtcgagcgacgtttctagcaag
ctacgcaagctgcgtatccgccaaaaagaagtgggtgcagtagtgtgtgacttcgacgat
ttccgcgaatctcgtggtggtgctcgtcgtgaaggtggcccacgtcgtgacggtggtcgt
cgtccagaaggcaaccgtgaaggcggtttccgtggtggtcgtgaaggcggccgcgaaggt
ggtcgtggccgtggtggtgaaggccgtcctttccgtgaaggtgagcgtcgttttgagcgc
aaccgtagtggtgagagcagtggtagctaccgtggtgagcgtggccatagccgccgtcgc
gaagaagcataa
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