Vibrio mimicus: AL543_06415
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Entry
AL543_06415 CDS
T04381
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AL543_06415 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vmi03400
]
AL543_06415 (recB)
Enzymes [BR:
vmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AL543_06415 (recB)
DNA repair and recombination proteins [BR:
vmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AL543_06415 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
AAA_11
WHD_ORC2
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AMG02700
LinkDB
All DBs
Position
2:complement(67722..71348)
Genome browser
AA seq
1208 aa
AA seq
DB search
MSADSNKLAVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLS
VDQILVVTFTEAATAELRDRIRRRLHDARLAFARGASEDPLLRSLLAEFTDHSLAVSLLL
NAERQMDEAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPL
PISLANEVRRLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARISEIKQHW
LAEREEIEPAVTGSDLHKNSQNALLRRLPILDDWAQSETQDLHVPSELEEFTQSGLLAKS
KKGNPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLS
AALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAI
YAFRGADIFTYIKARNQVSAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPV
AASPGADERHWTLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASG
AATFHRGEAIEAGDLAVLVRTGNEARMVRDALSEQGIASVYLSNRDSVFASDVAQDIERL
LLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIEEFRQYRRLWSERGVLP
MLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAA
QGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDVESATT
WVDLTGNEDALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSA
MGFLLQDGQEGGIADLQQALLKQCENLPDVAQCPPPKRFEQAYQPPKLDERELTARELSQ
TIDRRWRVTSYSGLVMQSSHARHDPLQDIPLLEVGGFDLDSAQERDGAALESVERSIFNF
PRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESDQIETEWLPMLQHLVDTVLSTP
LDGKALRLQQIMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHSVQGML
KGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFL
RSRLAHYDYEQHFGGVFYLFLRGMDGRTDQGVFHTKPSLALLDELDGLIAGRELAQRASK
AGQMELDL
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgattcaaataagctcgctgttacgctcgatacattgcgctttcccttgcat
ggggcgcggctgattgaagcttcggcaggtaccggaaaaacctacaccattgccggactc
tatctgcgtctggtgcttgggcatggctgcgcggaaactcgtcacgcgcatccgctaagc
gttgatcaaattctggtggtgacctttactgaagcggccactgcagagctgcgtgatcgt
attcgtcgccgcttgcacgatgcgcgcctcgcctttgcccgcggtgcgagtgaagatccg
ctgcttcgttccctgctggctgaatttaccgatcacagcttagccgtctctttgctgctc
aatgccgagcggcagatggatgaagcggccatttttactatccacggtttttgccagcgg
atgctgactcaaaatgcgtttgaatcgggcagtcgctttgaaaatgaattcgtcactgat
gaaagtcgcctcaaagcgcaagtggtggccgattattggcgcagacagttctaccccttg
cccatttctctcgcgaacgaagtgcgccgcttatggccggcgccctctgcgctgttggct
gagattgccggttatctttctgggccgccagtcaaactgaccacacctttgatggaaggg
gatttggccgcgctgcaacaagcgcagatagcgcgcatttccgagattaagcagcactgg
ttagcagagcgagaggagattgagcctgccgtaactggctctgacctgcacaaaaatagc
caaaatgcgctgctgcgccgtttaccgattctggatgattgggcgcaaagtgaaacgcaa
gatctgcacgtgccgtcagagcttgaagagttcacccaaagcgggttgcttgccaaatcg
aagaaaggcaatccgccacaattagcgctgtttgaacggatagaagcgtttcttgctgag
ccggtctcactcaaaacaccacttttggtgcatgcgattcatcactgtcgtcactggttg
gcgaaagccaaatctacccatcactggctctcgtttgatgacttgctcactcaactcagc
gctgcgttggataatgatgagcaagggctattgggcgagcggatccgcacgctttatccg
gtggcaatgatcgatgaattccaagataccgatccgctgcagtacagcatttttagtcgg
ctgtatctggactatccgcagtgtggtttgttgatgatcggcgacccgaaacaggcgatt
tacgctttccgtggcgcagatattttcacttacatcaaagcgcgcaatcaggtgagcgct
cactacaccttaggcactaactggcgctccagcgcggctatggtggcggcagttaaccaa
gtgtttagctccgcgactcatccgtttatttacagtgatgacattccctttcagcccgtg
gcggcaagccccggtgctgatgaacgccactggacactggaagggcaagtacaaccagcc
ttgacctattggtggcctgaagatcttgataaaccacaaagcaaaaccgattactacgcg
caaatggctgaggcgtgtgcggcgcaaattcagcacattttgactgcttcggcctctggc
gcggcaacctttcatcgaggcgaggcgattgaagcgggcgatctggcggtgctggtgcgt
actggtaatgaagcacgcatggtgcgtgatgcactcagtgagcaaggtatcgccagtgtt
tacctttccaaccgtgacagcgtgtttgccagcgatgtagcgcaagatattgaacgcttg
ctgctcgccgtgtggcagccagaagatgaacgcttgctccgtgcggccgtcgcctcgaat
ctgtttgcgttaaccgccagcgagttggatgcgctgaataatgatgaaaacgaatgggaa
cagttgattgaggagtttcgccaatatcgccgcttgtggagtgaacgcggcgtattgccg
atgctgcgtgcggtgttaactcagcgccacatcgccgagcgttggctggcggaaagtgaa
ggcgagcgctggctcaccgactatctgcacatcagcgaactcttgcagcaggccacgcgt
gagatcgatagcgatcagggcttactgcgttttctgactcaggcgatggcggatgctgcg
caagggctcggtggcagtgatgagcagatccagcgcctcgaatctgagcgccgtctggtg
cagattgtcaccatccacaaatcaaaagggcttgagtacccgctggtatttttgccgttt
gtgatgagttatcgcgagagcagcgaaggcaaatattacgacgttgaatcggccactact
tgggtcgatttaaccggcaatgaagacgcgttagccaaagccgatcaagaacgtttggca
gaagatttacgcttgctgtatgtggcgctcactcgcgctgtgtatggctgttttattggc
attgcgccgctgcgcaacggcaattcgagccaagagccgacctcggcgcatcgcagtgcg
atgggttttctgctgcaagatggtcaagagggcggtatcgcggatctgcagcaagctctg
ctcaaacagtgtgaaaacttgccagatgtcgcgcaatgcccgccaccgaagcgtttcgaa
caagcgtatcagccaccaaaattggacgagcgagagctgactgcgcgtgagttaagccaa
acgattgatcgccgctggcgagtcaccagttactcaggcttggtgatgcaatcgagtcat
gctcgtcacgatcctttgcaagacatccccttgcttgaagtgggcggttttgatcttgat
agtgcgcaagagcgtgatggcgcggcactggaatctgtcgagcgctcgattttcaatttc
ccgcgtggcgcacgccccggtactttcttgcattcattgtttgaagaggtggatttccag
caatcggcgcacagtgaacccaatactaaaatcatccttgaactgatggaaagtgatcag
attgaaaccgaatggctgccgatgttgcaacacttggtcgacaccgtattgagcacgcca
ctggatggtaaagcgctgcgcttacaacaaattatggccgcccagcgcctgaccgagttg
gagtttttactgccgatcgaagtgttggatgcgccaaccctgaatcgcatcacccagcgt
cacgatccgctctcggcacacgcgggtgatctcggttttcactcggtacaaggcatgctc
aaaggctttatcgatctggtgtttcaatatcaggggcgctattacgtgctggactggaaa
tccaaccatttgggtgacgatcctgcagcgtatcatccacagcgtttgggcagtgcgatg
gccgatcaccgttacgatctgcaataccagatttacgcgttagcgctgcatcgctttttg
cgcagccgtttagcccattacgactatgaacaacatttcggcggcgtgttttatctcttc
ttacgcgggatggatggccgcaccgatcaaggcgtattccataccaagccaagcttggcc
ttgttagatgagttggatggattgattgcagggcgcgagctggcacaaagagcgagtaaa
gctgggcagatggagcttgatttatga
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