Vibrio mimicus: AL543_06880
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Entry
AL543_06880 CDS
T04381
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vmi
Vibrio mimicus
Pathway
vmi03410
Base excision repair
vmi03430
Mismatch repair
vmi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AL543_06880
03430 Mismatch repair
AL543_06880
03440 Homologous recombination
AL543_06880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vmi03400
]
AL543_06880
DNA repair and recombination proteins [BR:
vmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AL543_06880
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AL543_06880
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AL543_06880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AMG02785
LinkDB
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Position
2:complement(191559..193298)
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AA seq
579 aa
AA seq
DB search
MIEIQRRPEPDLSLLPDTIAPLLRRLYLNRGVRDIAQLEKAAKALHSFKQLHGIERAVEL
LFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSHNVDYLVPNRFEDGYGLSPEVVD
QAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVLVTDHHLPGQELPEVDAMVNPNLQQCA
FPSKALAGVGVAFYLMMALCVHMRQQGWFVAQGIAEPKLMELIDLVALGTVADVVPLDDN
NRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFG
VELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQ
RDWHQGVIGILASRIKEKYHRPVIAFAEGSDGKLKGSCRSVPGLHMRDALDKIDTQNPGI
ILKFGGHAMAAGLTIEEQNFERFCRLFDNLVREELDEAALKGIILSDGELKPEEFSLHTA
EILRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVD
LRRWPDASVKTVRLAYKLDINEFRGSQSLQLMIDHIEAK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaatacagcgacgccctgaacccgatctctctcttcttcctgacaccatagct
cctctattgcgcaggctttacctcaaccgtggcgtgcgtgatatcgcgcaactcgaaaaa
gccgccaaagcactgcactcatttaaacagctgcatggcattgaacgtgcggttgagctg
ctgttcgcggcgattgccgaacaaaagcgcatcatagtggtaggggattttgatgccgat
ggcgcgactagctcggcgctttctgtattggcgctgcgcatgctgggtagtcacaatgtg
gattacttggtgccgaatcggtttgaagatggttatggcctcagtccagaagtggtagat
caagcgattgagcgtggcgcagagatgatcatgacggtggataacggagtttcttcgcta
gaaggtgtccgttatgccaagcagaaaggcttgcaagtgttggttaccgaccaccactta
ccggggcaagagttgccggaagtggatgccatggttaaccccaatttacaacagtgtgct
ttcccttctaaggcgctcgctggggtaggggtggcattctatttgatgatggcactctgc
gtgcacatgcgtcagcaaggttggtttgtcgcgcaaggcattgctgaacctaaattgatg
gagctgatcgatttagtggcgcttggcaccgttgccgatgtagtgcctctggatgacaac
aaccgcattctggtgcatcaaggcttgcagcgtattcgtgcaggcttagcacgtcccggt
attcaagcactgattgaagtcgccaaacgtgatgcacgccgtttagtggccgccgatttt
ggttttgcgcttgggccgcgaattaatgcggcggggcgtttggatgatatgtcgtttggt
gtcgaactgctgctatgtaacaacattcatgccgcgcggcgtatggctagtgaactggat
ggccttaatcaaacgcgtaaagagattgaagaagggatgaagcaagaggcagtcgcgttt
tgtgagcgattgcaactgagcgatgatcgcgaattaccttatggtttagtgctgtttcag
cgcgattggcaccaaggggtgatcggtattttggcttcgcgcatcaaagaaaaataccac
cgccccgtgattgcctttgctgaaggcagtgatggcaagctgaaaggttcatgtcgctcg
gttcccggtctacatatgcgtgatgcgttggataaaattgatacgcaaaatccgggcatc
attctcaagtttggtggccacgcgatggcggcgggcctcactattgaagagcagaatttt
gagcgtttttgccgactgtttgacaacttagtgcgtgaagagctggatgaagcagcactt
aaaggcattattctcagcgatggtgaactgaaaccggaagagttttctctgcatacggcg
gagatactgcgtgcaggaggcccgtggggacaagcgtttcctgagccgctgtttgatggt
gaatttaaagtgctgcaccaaaaactggtgggtgaaaagcatctcaagctgatgttagag
ccgctgtataaaggctttcccaccaatgtgatgattgatggtattgcgtttaatgtcgat
ttacgccgctggccggatgcgtcagtcaagacggtgcgtttggcttataaactcgatatt
aacgagtttcgtgggagtcagtctttgcagctcatgattgatcatatcgaagcgaagtag
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