Vibrio mimicus: AL543_07075
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Entry
AL543_07075 CDS
T04381
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vmi
Vibrio mimicus
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vmi03009
]
AL543_07075
Enzymes [BR:
vmi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
AL543_07075
Ribosome biogenesis [BR:
vmi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AL543_07075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_15
PCMT
Cons_hypoth95
Methyltransf_11
MTS
Methyltransf_4
PrmA
Methyltransf_23
DOT1
Ubie_methyltran
Methyltransf_12
Ribosomal_L22
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
AMG02823
LinkDB
All DBs
Position
2:complement(238270..239592)
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AA seq
440 aa
AA seq
DB search
MARFFQPKKQSTIDKKHQPVTIERLDHQGSGLAFLQKKPLFVDGALPGEEVLIQLTESKS
KYARGQLIKVLKPSTERVEPFCAHYAQCGGCDLQHLDRTGQINHKQLALSQLMVKFAGQS
LALSVPVCSDDQGYRRRARLSLMWDKKTQQLQFGFRRKQSKAIVSVTHCPVLEPSLNALL
PGLNALLSQWSQPELLGHVELVKGDNTQVLVLRHLGVLAEQDQQSLSDFATQKGLTLYLT
LEAGELQHVQGEAPYCEETGSRLSFLPNHFIQVNRAVNQQMVEQALNWLEVNKQDCVLDL
FCGLGNFTLPLAKQAQEVVGVEGVEEMVQHATHNAKLNQINNVAFYQANLEQDMTNASWA
QQKFAKVLLDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFCLEKLGM
LDMFPHTSHLESMALFVKKR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtttctttcaaccgaaaaagcaaagcacgatagataaaaagcaccaaccagtc
accatagaacggttggatcaccaaggcagcggactggcctttttgcagaaaaaaccgttg
tttgtggatggcgctttgccaggggaagaagtgctgattcaactgactgaaagcaaaagt
aaatacgcacgtgggcagttgatcaaagtgcttaaaccaagcactgagcgagttgagccg
ttttgtgcgcactatgcacaatgtggtggctgtgatttacagcatcttgaccgcacgggt
caaattaaccataagcagctggcgttaagtcaattaatggtgaagtttgcagggcagagc
cttgctctgtcagtgccggtttgctctgatgatcaaggttatcgtcgccgcgcaagacta
agcttgatgtgggataaaaaaacacagcagctgcaatttggttttcgccgtaagcagagt
aaagccattgtttctgtcacccattgcccagtacttgagccgagtttgaatgcgttatta
cctggactaaatgccttgctgagccagtggagccagcctgagttgctcggccatgtggaa
ttggtgaaaggcgacaatacgcaagtgttggtactacgccatttaggtgttttggctgag
caagatcagcagtctttatctgactttgccacgcaaaagggactaaccttatacctaacg
ctggaagcgggtgagctgcaacatgtgcaaggtgaagcaccatactgtgaagaaacgggc
agtcgtttaagctttttgcctaaccactttattcaagttaaccgggcggtgaatcaacag
atggtggagcaagcgcttaactggcttgaggtgaacaagcaagattgtgtgctcgatctg
ttttgtggcttaggcaatttcacattgccattggcaaaacaagcgcaagaagtggttggt
gtagaaggcgtggaagaaatggtgcagcatgccactcataacgccaaattgaaccaaatc
aacaatgtcgcgttttatcaggccaatttggaacaagatatgacgaatgcctcatgggca
cagcagaaatttgctaaagtactgctcgaccccgcccgtgctggtgcagaaggcattgtg
gatcaactggctgcgttaggtgcagagcgggtggtttatgtgtcgtgcaacccggcgaca
ctggctcgtgatagtcaaagcttgctgagccaagggttttgcttagaaaaactgggtatg
ttggatatgttcccacacaccagtcatctcgaatccatggctttgtttgtgaaaaagcgc
tag
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