Vibrio mimicus: AL543_08235
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Entry
AL543_08235 CDS
T04381
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AL543_08235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vmi03400
]
AL543_08235
Enzymes [BR:
vmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL543_08235
DNA repair and recombination proteins [BR:
vmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AL543_08235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
ResIII
Helicase_C
Zn_ribbon_PriA
AAA_30
PriA-like_WH
AAA_19
TrwB_AAD_bind
PIF1
AAA_22
Zn_ribbon_6
HypA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AMG03038
LinkDB
All DBs
Position
2:complement(458694..460898)
Genome browser
AA seq
734 aa
AA seq
DB search
MRPTIARVCLPVPLDKSFDYLIPAHLFPVPGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQ
LKSLQAVLDEAPVWPEKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSLKEWH
LTALGQEQLMLGVKRGAVKQAQVLHLLQHGALSHQALLDEEVSSSTLKTLVEKGWIECEE
RKPVVRPWPQEFEAKVDKPKLNQEQAIAIAAVNSHQGFGCFLLEGVTGSGKTEVYLNLIT
PVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGI
VIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHFENIPIVLGSATP
ALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRHLSAGN
QVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEIRCHHCGSQRPVIHQCKGC
GSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGT
QMLAKGHHFPDVTLVALLDVDGSLYSSDFRAAERLAQLFIQVAGRAGRASKPGEVVLQTH
HPEHSLLQALLHKDYHQFALTALEERKLAQLPPYSFLSLFRAEANQTAQVEDFLRQVRET
LRCNSWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRSLMQKILQSARPALQQLPLAS
KVRWSIDIDPQDLS
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccaccattgcccgagtttgtctacctgtacctctggataagtcctttgactat
ctgatcccagctcatctatttcctgtgccgggtggacgcgtacaagtgccttttgggcgg
caaaccttagtgggtatcgttcagtcgctcactcatcaatctgattttcctatcgaacaa
ctcaaatcactgcaagccgtattggatgaagcaccagtatggccagagaaactgcagtca
ctgctgcattggtgcagccagttctatcattatccacttggtgaaacctatgctaatgct
ttgcctggcgcattgcgaaaaggcaaagcagcagagctgactagccttaaagagtggcat
ttaacggctctcggccaagagcaactgatgcttggcgtgaagcgtggcgcggtaaaacaa
gcacaagttctccatttgttgcagcacggagccttatctcaccaagccttgcttgatgaa
gaggtaagtagcagcacattgaaaactttggttgagaaaggctggattgagtgtgaagag
cgtaagccagttgtgcggccgtggccgcaagagttcgaagccaaagtggataaacctaaa
ctcaatcaagaacaggcgattgcgattgccgcagtgaatagccaccaaggtttcggttgc
tttcttttggaaggggtaacgggttcgggcaaaaccgaagtctatctcaaccttatcacg
cctgttttggcacgcggcgagcaagccttggtgttggtgcctgaaattggcttgacccca
caaacgatcaaccgctttcgccagcgctttaacgtgccagtggaagtgatgcattccgcg
ttgaatgatacagaacgccttaatgcttggttggcagctcgcgataaagtcgcgggtatt
gtgattggtacacgttcggcactgctcacaccgtttgccaaattgggcattattatcgtt
gatgaagagcatgatagctcttataaacagcaagatagtctgcgttatcacgcccgtgat
gttgcggtgatgcgtgcccattttgaaaatatcccgattgtgctcggctcggcgactcct
gcactggaaaccttgcataatgctctaagtggtaaatatcaccatctgcaactgacgcag
cgtgcagggaatgcgttgccaacgcgtaatcatgcgttggatgtgaaagggttgtatctg
gaaagtggcctttcagctcctttgattgcggaaatgcgccgccatctttcggctggcaat
caggtgatgctgtttttaaaccgtcgcggtttttctccggctttgatgtgccacgaatgt
ggctggatcgcggaatgccagcgctgcgatgcgtattacacctaccatcagcacagtaat
gaaatccgctgccatcattgtggttcacagcgtcctgtgatccatcaatgtaaagggtgt
ggctcgactcaactggttactgtcggcgttggcacggaacagcttgaagctcaattacac
actctgtttcctgagtatcgttcggtgcggattgatcgtgatagcactcggcgcaagggc
agtttggaatccgcgttaaccgctatccgcaaaggtgaatatcagattttaattggtacg
caaatgctcgcgaaagggcaccatttccccgatgttacgttagtagcactgttggatgtg
gatggctcactgtatagcagtgactttcgtgccgccgaacgcttggcgcagttattcatc
caagtcgcagggcgtgcagggcgagccagtaaaccgggtgaagtggttttacaaacgcat
catcctgagcacagtttgctacaagccttactgcataaagactaccatcagttcgctctc
actgcgttggaggagcgtaagcttgctcagttgccgccatactctttccttagcttattt
cgagccgaagccaatcaaacggcacaagttgaagattttctacgccaagtgcgggaaact
ttgcgctgtaactcttggtttgacagcgaatgcatggtgcttggccctacacctgcccca
cttgcgaaaagagccggaaaattccgttggcaactgttactgcaaacgccgaatcgcagc
ttaatgcagaaaatattgcaaagcgcacgtcctgcattgcaacaacttccgctggcgagc
aaagtgcgttggtcgatcgatattgatccgcaagatctcagttaa
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