KEGG   Vibrio mimicus: AL543_08235
Entry
AL543_08235       CDS       T04381                                 
Name
(GenBank) primosomal protein N'
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
vmi  Vibrio mimicus
Pathway
vmi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vmi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    AL543_08235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vmi03400]
    AL543_08235
Enzymes [BR:vmi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AL543_08235
DNA repair and recombination proteins [BR:vmi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AL543_08235
SSDB
Motif
Pfam: PriA_3primeBD PriA_C DEAD ResIII Helicase_C Zn_ribbon_PriA AAA_30 PriA-like_WH AAA_19 TrwB_AAD_bind PIF1 AAA_22 Zn_ribbon_6 HypA AAA_16
Other DBs
NCBI-ProteinID: AMG03038
LinkDB
Position
2:complement(458694..460898)
AA seq 734 aa
MRPTIARVCLPVPLDKSFDYLIPAHLFPVPGGRVQVPFGRQTLVGIVQSLTHQSDFPIEQ
LKSLQAVLDEAPVWPEKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSLKEWH
LTALGQEQLMLGVKRGAVKQAQVLHLLQHGALSHQALLDEEVSSSTLKTLVEKGWIECEE
RKPVVRPWPQEFEAKVDKPKLNQEQAIAIAAVNSHQGFGCFLLEGVTGSGKTEVYLNLIT
PVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARDKVAGI
VIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHFENIPIVLGSATP
ALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRHLSAGN
QVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEIRCHHCGSQRPVIHQCKGC
GSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQILIGT
QMLAKGHHFPDVTLVALLDVDGSLYSSDFRAAERLAQLFIQVAGRAGRASKPGEVVLQTH
HPEHSLLQALLHKDYHQFALTALEERKLAQLPPYSFLSLFRAEANQTAQVEDFLRQVRET
LRCNSWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRSLMQKILQSARPALQQLPLAS
KVRWSIDIDPQDLS
NT seq 2205 nt   +upstreamnt  +downstreamnt
atgcgccccaccattgcccgagtttgtctacctgtacctctggataagtcctttgactat
ctgatcccagctcatctatttcctgtgccgggtggacgcgtacaagtgccttttgggcgg
caaaccttagtgggtatcgttcagtcgctcactcatcaatctgattttcctatcgaacaa
ctcaaatcactgcaagccgtattggatgaagcaccagtatggccagagaaactgcagtca
ctgctgcattggtgcagccagttctatcattatccacttggtgaaacctatgctaatgct
ttgcctggcgcattgcgaaaaggcaaagcagcagagctgactagccttaaagagtggcat
ttaacggctctcggccaagagcaactgatgcttggcgtgaagcgtggcgcggtaaaacaa
gcacaagttctccatttgttgcagcacggagccttatctcaccaagccttgcttgatgaa
gaggtaagtagcagcacattgaaaactttggttgagaaaggctggattgagtgtgaagag
cgtaagccagttgtgcggccgtggccgcaagagttcgaagccaaagtggataaacctaaa
ctcaatcaagaacaggcgattgcgattgccgcagtgaatagccaccaaggtttcggttgc
tttcttttggaaggggtaacgggttcgggcaaaaccgaagtctatctcaaccttatcacg
cctgttttggcacgcggcgagcaagccttggtgttggtgcctgaaattggcttgacccca
caaacgatcaaccgctttcgccagcgctttaacgtgccagtggaagtgatgcattccgcg
ttgaatgatacagaacgccttaatgcttggttggcagctcgcgataaagtcgcgggtatt
gtgattggtacacgttcggcactgctcacaccgtttgccaaattgggcattattatcgtt
gatgaagagcatgatagctcttataaacagcaagatagtctgcgttatcacgcccgtgat
gttgcggtgatgcgtgcccattttgaaaatatcccgattgtgctcggctcggcgactcct
gcactggaaaccttgcataatgctctaagtggtaaatatcaccatctgcaactgacgcag
cgtgcagggaatgcgttgccaacgcgtaatcatgcgttggatgtgaaagggttgtatctg
gaaagtggcctttcagctcctttgattgcggaaatgcgccgccatctttcggctggcaat
caggtgatgctgtttttaaaccgtcgcggtttttctccggctttgatgtgccacgaatgt
ggctggatcgcggaatgccagcgctgcgatgcgtattacacctaccatcagcacagtaat
gaaatccgctgccatcattgtggttcacagcgtcctgtgatccatcaatgtaaagggtgt
ggctcgactcaactggttactgtcggcgttggcacggaacagcttgaagctcaattacac
actctgtttcctgagtatcgttcggtgcggattgatcgtgatagcactcggcgcaagggc
agtttggaatccgcgttaaccgctatccgcaaaggtgaatatcagattttaattggtacg
caaatgctcgcgaaagggcaccatttccccgatgttacgttagtagcactgttggatgtg
gatggctcactgtatagcagtgactttcgtgccgccgaacgcttggcgcagttattcatc
caagtcgcagggcgtgcagggcgagccagtaaaccgggtgaagtggttttacaaacgcat
catcctgagcacagtttgctacaagccttactgcataaagactaccatcagttcgctctc
actgcgttggaggagcgtaagcttgctcagttgccgccatactctttccttagcttattt
cgagccgaagccaatcaaacggcacaagttgaagattttctacgccaagtgcgggaaact
ttgcgctgtaactcttggtttgacagcgaatgcatggtgcttggccctacacctgcccca
cttgcgaaaagagccggaaaattccgttggcaactgttactgcaaacgccgaatcgcagc
ttaatgcagaaaatattgcaaagcgcacgtcctgcattgcaacaacttccgctggcgagc
aaagtgcgttggtcgatcgatattgatccgcaagatctcagttaa

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