Vibrio mimicus: AL543_09590
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Entry
AL543_09590 CDS
T04381
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
vmi
Vibrio mimicus
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vmi03032
]
AL543_09590 (gyrB)
03400 DNA repair and recombination proteins [BR:
vmi03400
]
AL543_09590 (gyrB)
Enzymes [BR:
vmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
AL543_09590 (gyrB)
DNA replication proteins [BR:
vmi03032
]
Prokaryotic type
DNA Topoisomerases
AL543_09590 (gyrB)
DNA repair and recombination proteins [BR:
vmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AL543_09590 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
UFD1_N2
TcaA_2nd
Motif
Other DBs
NCBI-ProteinID:
AMG03269
LinkDB
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Position
2:737981..740398
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AA seq
805 aa
AA seq
DB search
MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV
VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGETERTGTTVRFWPSAQTFTNIE
FHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKV
FHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDK
EGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLAD
FLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSE
LYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKK
GKQEQYIKDEDAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSR
RYPYAMLHELIYVPRINADLCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNV
YLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSF
AAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMMQVTIEDAVGADELFTT
LMGDQVEPRRAFIETNALKVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacaattacgattcatcgagtattaaggtactgaagggtctggatgcggtacgt
aagcgtccgggtatgtacatcggcgacactgatgatggcaccggtctgcaccacatggtt
tttgaggtggtagataactcaattgatgaagcgttggcgggttactgtaaagacatcgtg
gtcactatccacgaagacaactcagtgtcagtcagcgatgacggtcgtggtatcccgact
gaaatgcatcctgaagagaaagtgtctgccgcagaagtcatcatgaccgtactgcatgca
ggcggtaaatttgacgacaactcctataaagtctccggtggtctacacggggtaggtgtg
tcggtagtgaatgccctgtcagaaaaagtgctgctgaccatttatcgtggtggcaagatt
cacacccaaacttaccatcacggtgtgccacaagcaccgttgtctgtagtgggtgagact
gagcgtaccggtactaccgtacgtttctggcctagtgcacagacttttaccaatatcgaa
ttccattacgacattctggctaaacgtctgcgtgagctgtcattcctgaactctggcgtg
tcgatcaagctgacggatgagcgtgaagaagataagaaagaccacttcatgtatgaaggt
ggtattcaagcgtttgtgacccacttgaaccgtaataaaacgccgatccatgaaaaagta
ttccacttcaaccaagagcgtgaagatggcatcagcgtggaagtggcaatgcagtggaac
gatggtttccaagaaaacatctactgctttaccaacaacatcccacagcgtgatggcggt
acccacttagctggtttccgtggtgcattgacccgtactttgaacaactacatggacaaa
gaaggcttctcgaagaaagcgcaagcagcaacctcgggtgatgatgcgcgtgaaggctta
acggcagtggtttcggtgaaagtgccagatcctaaattctcaagccaaaccaaagataag
ctggtttcttcggaagtgaaatccgcggttgagtcagccatgaatgagaagctggcggat
ttcctggcggaaaacccaagcgaagcgaaaaacgtttgttcgaagattattgatgcagca
cgagctcgtgaagccgcgcgtaaagcacgtgaaatgacccgtcgtaaaggcgcgctagat
ctcgctggtttgccaggcaaactggcggactgtcaggaaaaagacccagcattgtctgaa
ctctacatagtggaaggagattcagcgggtggttcagctaagcaaggccgtaatcgtaag
aatcaagcgattctgccgctgaaaggtaaaattcttaacgtagaaaaagcgcgttttgac
aagatgttgtcttcacaagaagtcgcgaccctgatcactgcattgggttgtggtatcggc
cgtgatgaatacaacccagataaactgcgttaccacaacatcatcatcatgaccgatgcg
gacgtcgacggctcgcacattcgtactctgttgttgaccttcttctaccgccaaatgcct
gagctgattgagcgtggttatatctacattgctcagccaccactctacaaagtgaagaaa
ggcaaacaagagcagtacatcaaagatgaagatgcgatgaaccagtaccaagtggcactg
gcgatggatggcgcagagctgcacgtgaatgccgatgctcctgcattggcgggtgaaccg
cttgagaagctggttcagcagtacaacgctgcgatcaaactggttgagcgcatgagccgc
cgttacccttacgcgatgctgcatgagctgatttatgtaccacgcatcaatgctgacttg
tgtgctgacaaagcggcggttgaagcttggacacagcgtttagtcgaacaactgaatgct
aaagaagtgggcgcgagccaatacagcgttctggttgaacacaatgctgagctgaatgtg
tacctgccaaaaattcaggtgcgtactcacggtgtgactcatgaatacttactgagtgct
gacctgatcaactcgaaagagtacgccaaactggcggatctgtctgaagcgctggacggt
ttgattgaagctggtgctttcatcaagcgtggtgaacgtgttcagccgatcagcagcttt
gcagcagcactcgagtggttgatcaaagaatcgcgtcgcggtctgtctatccaacgttat
aaaggtctaggtgaaatgaacccagatcagctgtgggaaaccacgatggatccagacact
cgtcgtatgatgcaagtgaccatcgaagatgcggtaggcgcggatgagctgttcactact
ctaatgggtgatcaagttgaaccacgtcgtgcatttatcgaaaccaacgcactgaaagtg
gccaacctcgacgtataa
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