Vibrio mimicus: AL543_10050
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Entry
AL543_10050 CDS
T04381
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03420
Nucleotide excision repair
vmi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL543_10050 (uvrD)
03430 Mismatch repair
AL543_10050 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vmi03400
]
AL543_10050 (uvrD)
Enzymes [BR:
vmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL543_10050 (uvrD)
DNA repair and recombination proteins [BR:
vmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL543_10050 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
AL543_10050 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Speriolin_C
Motif
Other DBs
NCBI-ProteinID:
AMG03346
LinkDB
All DBs
Position
2:829449..831620
Genome browser
AA seq
723 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMA
VTFTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQ
QRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPAHINAFDPVTQTYLKLYTAYQEA
CDRAGLVDFAEILLRTLELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQ
SNVMIVGDDDQSIYGWRGARVENIEKFTLEFPSVNTIRLEQNYRSTKTILEASNTLIANN
SERMGKQLWTEGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQS
RVLEEALLQANLAYRIYGGMRFFERQEIKDALSYLRLIANRNDDTAFERVINTPPRGLGD
KTLDTIRFAARDRGCTLWDASIGLLNDQVLTGRAAGALSRFVELINALEEEGIDMPLHVL
TDHAVKTSGLFEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAAL
EAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY
VGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRFS
QTVVKESFNETGFSLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYARL
EKV
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatccttctctgttactcgacggtctcaacgataaacaacgcgaagcggtggca
gcgccactggaaaacttgctgattttagccggtgcaggcagtggtaaaacccgcgtgctg
gtgcaccggattgcgtggttgatgtcggtggaagaagcctcgccgttttcggtgatggcg
gtaacctttaccaacaaagcggcggcagaaatgcgcggccgaattgaagagttgatgcat
ggcaccgcctctggcatgtggtgcggcaccttccacggcatttgtcaccgtatcttgcgc
gcccattatctggacgctaagttgctggaagatttccagattatcgacagtgatgatcag
cagcgtctgctcaaacgcctcatcaaggcgcataatctggatgacaaacagtggccggca
cgtcaagtcgcgtggtggatcaacaatcaaaaagatgaaggcctacgtcctgcgcatatc
aatgcgtttgatccggtcacccaaacttacctcaagctctacaccgcttaccaagaagcg
tgcgatcgcgccggcttggtcgatttcgcggagattttgctgcgtactttagagctactg
cgtggtaatcagcatattcgtgagcattatcaggcgcgctttaagcacattttggtcgac
gaattccaagataccaacgcgattcagtacgcttggctacgcatgatggcaggcgcacag
tcgaacgtaatgatcgttggtgatgatgaccagtctatttacggctggcgtggtgcgcga
gtagaaaacatcgagaaatttaccctcgagtttccaagcgtgaataccattcgactggag
caaaattaccgctccaccaaaaccattttggaagcctcgaacacgttgattgccaataac
agcgagcggatgggcaagcagctgtggactgaaggtttggtcggcgagcccatttcagtt
tactcggcgtataacgagctcgatgaagcgcgttttgtggtcagcaaaatcaaaggctgg
caggagcagggtggcacactgaccgattgtgcgattttgtatcgcaacaacgcccagtcg
cgggtgctggaagaggcactcttgcaagccaacttggcctaccgcatttatggcgggatg
cgctttttcgagcgccaagagatcaaagatgcactgagttatctgcgcctgattgccaac
cgcaatgacgatacggcgtttgagcgcgtgatcaatacaccgcctcgtggtttgggtgac
aaaacgctcgataccattcgctttgcggcgcgtgatcgcggttgcaccttgtgggatgcc
agtatcggtctgctcaatgaccaagtgctaacggggcgtgccgcgggcgcgctgagtcgc
tttgttgagctgatcaatgccttggaagaggaaggcatcgacatgccgctgcatgtgctg
actgaccatgcggtgaaaacctccggtctgtttgagatgtaccagcaggagaaaggcgaa
aaatccaaagcgcgaattgaaaacttggaagagctggtgacggcaacgcgccagtttgaa
aagccagaagaagcgcaggatatgaccatgctgaccgcgtttttgacccatgcggcactg
gaagcgggtgaaggccaagccgatgaacatgatgatgcggtacagctgatgaccttgcat
agcgccaaagggttggagttcccgctggtgtttatggtgggtgtggaagaggggatgttc
cccagccaaatgtctgccgaagaggctgggcgtctcgaagaagagcgccgcctgtgttat
gtcggcatgacccgtgcgatgcaaaagctctacatcacttacgcggagatgcgccgtttg
tacgggcaagataagtatcacaagccatcacgctttattcgtgaactgccagaaggctgt
ttggatgaagtgcgcatgaaggcgcaagtgagccgcccaaccagcacgggacgctttagc
caaactgtggttaaagagagttttaacgaaactggttttagtttgggttcacgggtacgt
cacccgaaatttggtgaaggcaccatcattaactttgaaggcagtggcccacaaagccga
gtgcaggttgcgtttaatggcgaaggcattaaatggttagtcacggcttacgcaagatta
gagaaggtgtaa
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