Vibrio mimicus: AL543_10080
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Entry
AL543_10080 CDS
T04381
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL543_10080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmi03019
]
AL543_10080
03400 DNA repair and recombination proteins [BR:
vmi03400
]
AL543_10080
Enzymes [BR:
vmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL543_10080
Messenger RNA biogenesis [BR:
vmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL543_10080
DNA repair and recombination proteins [BR:
vmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AL543_10080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AMG05235
LinkDB
All DBs
Position
2:837090..838925
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AA seq
611 aa
AA seq
DB search
MTATLMAETPTLSVTPERVLHEVFGYQQFRVGQQEVIDAALQGRDSLVIMPTGGGKSLCY
QIPALVREGVTLVISPLISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLK
LLYVSPERVLTAEFIERLSNLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNIPV
MALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPD
GAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKRFDATEEAR
KALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLF
AKLRKLRKSIADEEGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLEKYADPFL
DLIQEHLTYHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaaccttaatggctgaaactcctactctctctgttactcctgaacgtgttctg
cacgaggtgtttggctatcagcaatttcgtgttggtcagcaagaggttatcgatgcggcg
ttgcaagggcgtgatagcttggtgatcatgcccactggcggcggaaaatcactctgttac
cagatcccagcgctggtgcgcgaaggggtcacattagtcatttctcccctgatttcgctg
atgaaagatcaggttgaccaactgaaagccaacggtgtggcggcagagtgcgtgaattct
actttggcgcgcgaagagctgatcgcgatttataaccgcatgcacgctgggcagctcaag
ctgctgtatgtgtcgccggagcgagtgctgacggccgagtttattgagcgtctcagcaat
ctgcctttagccatgattgcggtcgatgaagcgcactgtatttcgcaatggggacacgat
tttcgtcccgaatacgcctcactaggccagcttaagcagcgttttcctaatatcccagtg
atggcacttactgcgactgcggatgacgcgacgcgtcacgacattatgcagcgtttgcag
cttaatgagccgcatcagtatctgggcagttttgatcgcccgaatattcgctacatgctg
gtggaaaaacataagcccgtttcacaagtgattcgttatctggaaactcagcgcgggcag
tgcggcatcatttattgcggtagccgtaaaaaagtcgaaatgctcaccgaaaagctgtgc
ggcaaccatattcgtgccgccagttatcatgcagggatggacgccgatgaacgcgcttgg
gtacaagaggcatttcagcgtgatgacctgcaaattgtggtggcgactgtggcgtttggc
atggggattaataaacccaacgtgcgctttgtggtgcattttgatattccacgcaacatc
gaatcctactatcaggaaaccggccgcgcaggacgtgatggcctgccagctgaagccatg
atgttgtacgaccccgctgacatgaactggctgcgccgaatgctcgatgaaaagcccgat
ggcgcgcaaaagcaagtagaaagccacaagctcaccgcgatgggcgcgtttgctgaagcg
caaacttgtcgccgtcaggtgctgctcaattatttcggcgaatatcgcgataagccgtgt
ggcaactgcgatatctgcctcgatccgcccaagcgttttgatgccactgaagaggcgcgc
aaagcgttgtcgtgtgtctatcgcgtcaatcaaaacttcgggattggctatgtggtggaa
gtgttgcgcggtatgcagaacatccgcattcgcgaacatggtcacgacaaaattaccact
tatgggattggccgcgatcacagccacgattactgggtgagtattttccgccaactgatc
cacaaaggcatgctctaccaaaacatcacgcgtaactcgacgctgcaactgactgaagaa
gcacgcccgctgctgcgcggtgagatgaatattgagctggcggtaccgcgtttagatacc
gcggcgcgcgcggcgaaatccgacaaattgtcgggcaaaaactacgacaaaaagctgttt
gccaaactgcgtaagctgcgtaaatcgatcgccgatgaggaaggtttaccaccgtatgtg
gtgttcagtgacgcgaccttaattgatatggcggagatcttgccgacctcctatggcgag
atgctggcggtgaacggggtagggcagcgtaagttggaaaaatatgccgacccgtttttg
gatctgattcaggagcatttgacttaccatggctga
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