Vibrio mimicus: AL543_10205
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Entry
AL543_10205 CDS
T04381
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AL543_10205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vmi03400
]
AL543_10205
Enzymes [BR:
vmi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AL543_10205
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AL543_10205
DNA repair and recombination proteins [BR:
vmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AL543_10205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
COOH-NH2_lig
HscB_4_cys
Zn_ribbon_6
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AMG03372
LinkDB
All DBs
Position
2:862422..863231
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AA seq
269 aa
AA seq
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MPELPEVEVSRLGISPHLVGGTIQSLILRTPKLRWPIPQELKQLEGQKILAIHRRAKYLI
IETAVGSAIVHLGMSGSLRILDGDFPAAKHDHVDLVMTSGKRLRYNDPRRFGAWLWCAPD
ESHEALGCLGPEPLTEAFNAEYMVDKARNKRIAVKAFIMDNAAVVGVGNIYANESLFTSR
IHPLRPANSLSLDEWQTLVANIKQVLQVAIKQGGTTLKDFTQSDGKPGYFAQELQVYGKA
KQPCPNCGEPLCEQKVAQRNTFFCPQCQH
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttaccagaagttgaagtcagtcgtttagggatttcccctcatttggttggt
ggcacgattcaatccctaatattgcgtacgcccaagttgcggtggccaattccacaagag
cttaaacaacttgaagggcagaaaattctcgctattcatcgtcgagctaaatatctgatt
attgaaacagcagtcggtagtgcgattgttcatttgggcatgtccggctcgctgcgcatt
ttggatggtgattttcctgcggcgaaacacgatcacgtggatctggtgatgaccagtggt
aaacggctgcgctataacgatccgcgccgcttcggggcttggttatggtgtgcacccgat
gagagccatgaagcgctcgggtgtttagggcctgagcctctgaccgaagcatttaatgca
gaatacatggtcgataaagcacgcaataaacgcattgcagtgaaagccttcattatggac
aacgcggcggtagtgggcgtgggcaatatctacgccaatgaatcactgtttacttcacgc
atccatccactgcgccctgccaattcactgagtttggatgagtggcaaaccttggtggcg
aacatcaaacaagtgctgcaagtagcgattaagcaaggtggcacaacgctgaaagacttt
acccaaagcgatggtaagccgggctatttcgcgcaagagctgcaagtgtatggcaaagca
aaacagccttgccccaattgtggtgaaccgctttgcgagcagaaagttgcgcagcgtaat
acctttttctgtccgcagtgccagcattga
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