Vibrio mimicus: AL543_10710
Help
Entry
AL543_10710 CDS
T04381
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL543_10710 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vmi03021
]
AL543_10710 (rpoC)
03400 DNA repair and recombination proteins [BR:
vmi03400
]
AL543_10710 (rpoC)
Enzymes [BR:
vmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL543_10710 (rpoC)
Transcription machinery [BR:
vmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL543_10710 (rpoC)
DNA repair and recombination proteins [BR:
vmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL543_10710 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AMG03458
LinkDB
All DBs
Position
2:970950..975155
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLSSMDLQAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGVYLTGPAEAEKAYRTK
TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL
GRVVAEDILKPGTEEVLIPRNTLLDEKWCKVINDNSVDQIQVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL
HNAKFVINKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADSDAVAAGETVANW
EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEG
ERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGPS
AEQATDNLAALLNAGFSSDDE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagactgaagaatttgacgcgatc
aaaatcggtctggcttcaccagacatgatccgttcatggtcttttggtgaagtgaaaaaa
cctgaaaccatcaactatcgtacgttcaagcctgagcgtgatggtctgttctgtgcgcgt
atttttggcccggtaaaagactacgaatgtctttgtggcaaatataagcgtctgaaacac
cgtggcgtgatttgtgagaagtgtggcgttgaagtcactcaaactaaagttcgtcgtgac
cgtatgggccacatcgagctagcttctccagttgcacacatctggttcctgaagtctctg
ccatctcgtatcggtctgctgatggacatgcctctgcgtgacatcgaacgcgtactgtac
tttgaaatgtacgtagtgactgagccaggcatgactgaccttgaacgtggtcaaatgctg
actgaggaagagtacctcgaccgtttggaagagtggggcgatgagttcaccgcgaaaatg
ggtgcagaagcgatcaaagatctgctgtcatctatggatctgcaagcagaagctgagcag
atgcgcgaagagctggacaccactaactctgaaaccaagcgtaagaaactgactaagcgc
ctgaagctggttgaagcgttcgttgcatcaggtaacaaacctgaatggatgatcctgact
gtactaccagttctgccgcctgatctacgtccactggttccactggatggcggtcgtttc
gcaacatcagatctgaacgatctgtaccgtcgcgtaatcaaccgtaacaaccgtttgaag
cgtctgcttgaactggctgcaccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgtggatgcgctgctggataacggccgtcgtggtcgtgcgatcactggctcgaac
aagcgtcctctgaagtctctggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactcaggccgttcggttatcaccgtaggtccatac
ctgcgtctgcaccaatgtggtctgccgaagaaaatggctcttgagctgttcaaaccattc
atctacagcaagctggaaactcgtggcctagcaacgacaatcaaagcagctaagaaaatg
gttgagcgcgaagaagcggtggtatgggatatcttggatgaagttatccgtgaacaccca
gtactgctgaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaaccagtt
ctgatcgaaggtaaagcgatccaactgcacccactggtgtgtgcggcgtataacgcggac
ttcgacggtgaccaaatggcggtacacgttcctctgacgcttgaagcgcagttggaagct
cgtaccctgatgatgtcaaccaacaacattctgtcgcctgcgtcaggtgatccaatcatc
gtaccatctcaggacgttgtactgggtctgtactatatgacccgtgaaaagatcaacgcg
aaaggcgaaggtgtgtacctgactggtcctgctgaggctgagaaggcgtaccgtactaag
actgctgagctgcacgctcgcgttaaagtacgtattaccgaaaccatcaagcatgaaaac
ggtaagctgacgactgaaaccaagatgattgacacgaccgttggccgtgccatgttgtgg
caaatcgtaccgaaaggtctgccatacagcttggtgaaccaaaagctaggtaagaagcaa
atttctaacctgctgaacgaggcataccgtaagctgggtctgaaagacacagttatcttc
gctgaccaaatcatgtacaccggtttcgcttacgcggcactgtctggtgtatcggttggt
atcgacgatatggtagtaccagcggctaagtacactgaaattgctgaagcggaagaagaa
gtacgcgaaattcaagagcagttccagtctggtctggttactgctggcgaacgctacaac
aaagtgatcgacatttgggcatcaaccaacgatcgcgtagcgaaagcgatgatggaaaac
ctctcttctgagcaggtgatcaaccgtcaaggcgaacaagaaaagcaagagtcgttcaac
agcatctatatgatggccgactcaggtgctcgtggttctgctgctcagatccgtcagttg
gcgggtatgcgtggtctgatggcgcgtccagatggctcgatcatcgaaacgccaatcacg
gcaaactttaaagaaggtctaaacgttcttcagtactttatctcaacgcacggtgctcgt
aagggtctggcggatacggcactgaaaactgcgaactctggttacctgactcgtcgtctg
gtagacgttgcgcaagacgttgtagttactgaacacgactgtggcaccttagaaggcgtg
gtgatgacaccacacatcgaaggtggtgacgtgaaagtggctctgactgaactggctctg
ggccgtgtggttgcggaagatatcctcaaaccaggtacagaagaagtgctgatcccacgt
aatacactgctggatgaaaagtggtgtaaggtgatcaacgataactcagttgaccaaatc
caagtacgttcagtggtaacttgtgattctgacttcggttgttgtgcacagtgttacggt
cgtgaccttgcacgtggtcacttggtgaaccaaggtgaagcggtcggtgttatcgcggca
cagtcaatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcaacagcagcagcagaaaacagcatccaagcgaaaaacaacggttctgtgaaactg
cataacgcgaagttcgtaatcaacaaagatggcaagctagttatcacgtctcgtgcttct
gagctgaccatcattgacgaatttggtcgtaccaaagagaaacacaaactgccatacggc
tctatgctgagcaaagccgatagcgatgcagttgcagcgggtgaaactgttgcaaactgg
gaagcgcacaccatgccaatcatcactgaagtggctggtcgcgtacagtttgtggatatg
atcgatggcgtaactgtttctcgtcaaactgacgatctgactggtctgtcttcaagcgaa
gtgactgaagccgcagcgcgtcctgcagcaggtaaagatatgcgtccagcgattaagctg
gttgatgcaaatggtaaagatgtcctgatcccaggtactgatatgccagctcaatacttc
ctgccaggtaaagcgattgtgaacttggacgacggcgctgaagtgaatgtgggtgataca
ctggctcgtattcctcagaagtctggcggtaacaaggacatcaccggtggtctaccacgc
gttgctgacctgtttgaagcgcgtaagccaaaagagcctgcgattctggctgagcactca
ggtactgtatcgttcggtaaagagaccaaaggtaagcgtcgtctgatcatcactcgtgac
agtggtgacacttacgaagagatgatccctaaacatcgtcaattgaacgtgtttgaaggt
gagcgcattgagcgtggtgatgtgattgcggacggcccagagtctccacatgatatcctg
cgtctgcgtggtatccatgcagtgaccacttacatcgcgaacgaggttcaggaagtttac
cgtctacaaggcgttaagattaacgataagcacatcgagactatcgttcgtcaaatgctg
cgtaagtgtacgataaccttcgcgggggactcagagttcttgcctggcgagactgttgag
tactcacaagtgaagatcgctaaccgtaaactggttgaagaaggcaaagagccagctcgt
ttcgagcgtgagctgctgggtattaccaaagcatctctggcgactgagtccttcatctcg
gctgcatcgttccaagaaaccactcgcgttctgactgaagcagcggtatctggtaagcgt
gacgatctgcgcggtctgaaagagaacgtaatcgttggccgtctgatccctgctggtact
ggttttgcgtaccaccaagatcgtcaagctaaacgtgcacaagaacagcaaggtccatcg
gctgaacaagccactgataacctagctgcactgttgaatgcaggtttctcttctgacgac
gagtaa
DBGET
integrated database retrieval system
