Vibrio mimicus: AL543_11695
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Entry
AL543_11695 CDS
T04381
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vmi
Vibrio mimicus
Pathway
vmi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AL543_11695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vmi03021
]
AL543_11695
Transcription machinery [BR:
vmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AL543_11695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HAP1_N
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AMG03621
UniProt:
A0A1D8SDR9
LinkDB
All DBs
Position
2:complement(1170935..1172812)
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AA seq
625 aa
AA seq
DB search
MDQNPQSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP
DADDLALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQSAIAEYPGTIPYILEQFDKVQAEELRLTDLISGFVDPNDMETEAPTA
THIGSELSEADLADEDDEVAEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKF
QNLQLAVNEFGRDSNQASEASSLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVM
KAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVQKVREQEDDIRRSIQKLQMIE
QETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR
QMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL
ELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR
QIEAKALRKLRHPSRSEVLRSFLDE
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagcttaaacaacttgtccttcgaggcaaggaacagggc
tatctgacctacgccgaagtaaatgaccacttgcctgctgaaatcgttgattcagagcag
gtggaagatattattcagatgatcaatgacatgggtatcaaggtagttgaaacagctcct
gatgccgatgatctcgccctcagcgatgataccaccatcactgacgaagatgctgccgaa
gcagcagccgcggcactttcaagcgtagagagtgaaattggccgcactaccgaccctgtt
cgcatgtacatgcgtgaaatgggtacggttgagcttttgacacgtgaaggcgaaatcgat
attgccaagcgcattgaagatggtattaaccaagttcaaagtgcgattgctgagtatcct
ggaaccatcccatacattcttgaacagtttgacaaggttcaggcagaagaactacgtctg
actgatctgatttctggtttcgttgatcctaacgacatggaaaccgaagcgccaactgct
actcacatcggttcagagctctctgaagccgatctcgctgatgaagatgacgaggtcgcg
gaggatgaagacgaggatgaagatgaagacggcgacggtgaaagtagcgacagcgaagaa
gaagtgggtattgaccctgagctcgctcgtgagaaattcaatgaactgcgcggcaagttc
caaaacctgcaattagcggttaatgaatttggtcgtgacagtaaccaagcatctgaagct
tcaagcctggtactggatatcttccgcgaattccgcctaacaccaaaacaatttgaccat
ttggttgaaactctgcgtacctcgatggatcgtgttcgtacccaagagcgtttggtgatg
aaagcagtggttgaagtcgcgaaaatgccaaagaaatcatttattgccctatttacaggc
aatgaatcgaatgaggaatggcttgataaagtactcgcttctgataaaccttatgtacaa
aaagtacgtgagcaagaagacgatattcgccgctcaatccaaaaacttcagatgatcgaa
caagagacttcactgtctgttgagcgtatcaaagacatcagccgtcgtatgtctatcggt
gaagcgaaagctcgccgtgcgaaaaaagagatggtagaagcgaacttacgtctggttatt
tcgattgctaagaaatacaccaaccgtggtctgcaattcttggatctgatccaagaaggt
aacatcggcctgatgaaggctgtagacaagtttgaataccgtcgtggttataagttctcc
acttatgcgacttggtggatccgtcaggctatcacccgctcaattgcagaccaagcacgt
actattcgtattccagtgcacatgatcgaaacgatcaacaaactgaatcgaatctcgcgc
caaatgctgcaagagatgggtcgtgagccgctgccagaagaattggcagagcgcatgcaa
atgccagaagacaagatccgtaaagtgctgaaaattgctaaagagccaatctccatggaa
acaccaatcggtgatgatgaagattcgcatctgggtgattttattgaggatacgaccctt
gaactaccactggactctgcgacagcaaccagccttaaagcggctactcgcgatgtatta
gcgggtctaactcctcgtgaagccaaagtgctgcgtatgcgtttcggtattgatatgaat
accgaccatacattggaagaagtgggcaaacagtttgacgtaactcgtgaacgtattcgt
cagattgaagctaaagcgctgcgtaagctgcgtcatccaagccgctcagaagttctgcgc
agcttcttggatgaataa
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