KEGG   Vibrio mimicus: AL543_11940
Entry
AL543_11940       CDS       T04381                                 
Name
(GenBank) signal recognition particle protein
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
vmi  Vibrio mimicus
Pathway
vmi02024  Quorum sensing
vmi03060  Protein export
vmi03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vmi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    AL543_11940
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    AL543_11940
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AL543_11940
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vmi02044]
    AL543_11940
Enzymes [BR:vmi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     AL543_11940
Secretion system [BR:vmi02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   AL543_11940
  Eukaryotic Sec-SRP protein
   AL543_11940
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N CbiA AAA_22 Zeta_toxin cobW T2SSE KTI12 AAA_30 AAA_31 AAA_33 AAA_24 AAA_19 Mg_chelatase Helicase_RecD AAA_18 APS_kinase AAA_16 GlnD_UR_UTase AAA_26 AAA_14 YqeC ATP_bind_1 KAP_NTPase DUF3867 Rad17 Thymidylate_kin FliD_C
Other DBs
NCBI-ProteinID: AMG03661
LinkDB
Position
2:1215105..1216490
AA seq 461 aa
MFENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAV
GVEVSKSLTPGQEFIKIVRQQLETVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKL
SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK
KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAITPVETLFVVDAMTGQDAANTAKAFGDAL
PLTGVILTKVDGDARGGAALSVRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV
LSLIEDLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPGMSQL
PADMKDKVDDRVFKQMEAIINSMTMKERQNPDLIKGSRKKRIAAGSGTQVQDVNRLLKQF
TQMQKMMKKMQQGGMKGMMRNMQGLMGGGGRGGFGGGFFGR
NT seq 1386 nt   +upstreamnt  +downstreamnt
atgtttgagaatttaaccgatcgattgtccaaaacgctgaagaatatcagcggcaaaggt
cgtcttactgaagacaacattaaagataccctgcgcgaagtgcgcatggcgctgttagag
gcggatgttgccctgcctgtagtacgtgattttgtgaatcgcgttaaagaaggtgccgtt
ggtgtcgaagtttctaaatctctgactccgggtcaagagttcattaaaatcgtccgtcag
caactagaaaccgtgatgggcgaatccaatgaagcgctgaatctggctgcgcagccaccc
gctgttattttgatggccggtttgcaaggtgcgggtaaaaccacttcggttggtaaactc
tctaagctcttaaaagagcgtgataagaagaaagtgctggtggtttctgcggacgtttac
cgtccggcggcgatcaaacagttggaaacgttggctaatgatttaggtgtcgatttcttt
ccatcaacaccagaccaaaagcctattgatatcgctaatgctgcgattgatcacgccaag
aagaaattctacgacgtactgattgtcgatactgctggtcgtttggcgatcgatgaacag
atgatggccgagattcaggcgctgcataaagcgatcacaccggtcgaaaccctgtttgtt
gttgatgcgatgactggccaagatgctgccaatacggcgaaagcgtttggtgatgcactg
ccactaacgggtgtcattctgacgaaagtggatggtgatgcgcgtggtggtgcggcactg
tccgttcgtcatatcacaggcaaaccgatcaaattccttggtgttggtgagaaaaccgat
gctttagaaccgttccatcctgatcgtattgcttcacgtatcctcggcatgggcgatgta
ctgtcgctgatcgaagatttacagcgtaacgtcgatcaagagaaagcagagaaactggcg
aaaaaattcaaagagaagaaaggctttgatttagaagattttcgtgagcagttaggtcag
atgaaaaacatgggtggcatgatgggtatgctcgacaaactgcccggtatgtctcagtta
cctgctgatatgaaagataaagtcgatgatcgtgtcttcaaacaaatggaagccatcatc
aactctatgaccatgaaagagcgtcaaaaccctgatctcattaaaggctctcgtaaaaag
cgtattgccgcaggttccggcacccaagtgcaggatgtaaaccgcctgctgaaacaattt
acccaaatgcagaagatgatgaagaaaatgcaacagggtggcatgaaaggtatgatgcgt
aatatgcaaggcctaatgggtggcggcggccgtggtggttttggcggtggtttctttggc
cgctaa

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