Vibrio mimicus: AL543_12425
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Entry
AL543_12425 CDS
T04381
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vmi
Vibrio mimicus
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vmi03009
]
AL543_12425
Enzymes [BR:
vmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL543_12425
Ribosome biogenesis [BR:
vmi03009
]
Prokaryotic type
rRNA helicases
AL543_12425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
UvrD-helicase
AAA_30
AAA_11
UMPH-1
Motif
Other DBs
NCBI-ProteinID:
AMG03748
UniProt:
A0A2J9V1B3
LinkDB
All DBs
Position
2:complement(1323974..1325224)
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AA seq
416 aa
AA seq
DB search
MIKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP
ALQYLLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHAD
ILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWR
KQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPHKVELLKK
ILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNIL
LATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMAR
VERYIKEEVKERFIDGLRPKHKKPVFKKKKKDTKKATDKGTAKKKTASKAKTAKKK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
gtgattaaaacctttgccgacctcgaactcgatccagtgctgcttgaagcgatcgaagaa
atgggctttagccgcccaacccaagttcaggctgaagcaattccgcaagctctggatggt
cgcgatgtcttagcctctgccccaacgggtacaggtaaaacggcggctttcgcgatccca
gcgctgcaatacttgctcgatttccctcgccgcaaagcaggcccagctcgaatcctgatt
ctaacgccaacccgtgaactggcgatgcaagtggcagaacaggcacaagccctggccaaa
aacactcgcctgaatatttttaccatcactggtggtgttcagtaccaagaacacgcagat
attctggccaccacacaagatatcgtggtggccactccgggacgtctgctggaatacatt
gatgctgaacgctttgattgccgagcgattgagtggctgattctcgatgaagcggaccgc
atgctggacatgggttttggcccaaccgttgaccgcctttcggcagagtgtcgctggcgt
aaacagacactgctgttctctgcaacgttagaaggacgcggtgttgaaggctttactgcc
gatctgttgaaaaacccagctcatattgatgctgagcctccacgtcgtgagcgtaaaaag
atttcacagtggtaccaccgcgcggatgacatgccgcataaagtagaactgttgaaaaag
atcctgactgaacaagctgagcgttcaattgtgtttttgaaaacccgtgagcgtctcgct
gacctgcgtgctgagttagaaaaagcccagatcccgtgtgcgtggatccaaggtgaaatg
ccacaagatcgccgtaacaatgcgatcacccgtttccgtgaaggttcagtgaacattctg
ctcgcaaccgatgttgcggcacgcggtatcgacgttccggacatcagccatgtgatcaac
tttgacttaccacgcagcgcagacgtctacctgcaccgtattggtcgcactggacgtgcg
gggaaaaaaggcatcgcgatttctctggttgaagcgcacgaccaacccatgatggcgcga
gttgagcgttacatcaaagaagaagtgaaagagcgctttattgatggcctacgccctaaa
cacaaaaagcctgtgtttaagaaaaagaaaaaagacaccaaaaaagcaacggataaaggc
accgcgaaaaagaaaaccgcaagcaaagcaaaaacggcaaagaaaaaataa
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