Vibrio mimicus: AL543_15485
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Entry
AL543_15485 CDS
T04381
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
AL543_15485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vmi03400
]
AL543_15485
Enzymes [BR:
vmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
AL543_15485
DNA repair and recombination proteins [BR:
vmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
AL543_15485
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AL543_15485
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AL543_15485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AMG04295
LinkDB
All DBs
Position
2:complement(1972017..1973441)
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AA seq
474 aa
AA seq
DB search
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE
AALITGITPQKANSLGLPEPEFISRIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID
PYAWSWQRGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHD
AMADVIATIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLV
HLNKCPILAPAKTLTAENAEKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFAKEN
NVDSQLYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTD
AEQRRWAAHCRDYFERNLESYMLNLENLVHEHQTDEKKMAILKSVYHYVEKLAH
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagaacaccagcccacatttttcttttttgactacgagacttggggagtgaat
cccgccaaggatcgccctagtcagtttgcgggtgttcgtaccgatatggatttcaacatc
attggtgagccgctggtgatttactgtcaattaccaaatgattatttacccgctcctgaa
gcggcgctgatcaccggaattactccacagaaagcgaatagtttaggcttaccagagcca
gaatttatctcccgcattcatgctgaactctccacgccaaacaccaccagcttaggctac
aacagcatccgttttgacgatgaagtgacacgatacacctgctatcgcaactttatcgac
ccgtatgcatggagctggcagcgcggtaattcccgttgggatctgctggatgtgattcga
gcttgccatgctctgcgccctgaaggcatcgaatggccagagaatgatgaaggctttact
agctttaagttagaacacctttctgtcgccaacggcattgaacacagtaacgcacacgat
gcgatggctgacgtgattgctaccattgaattggctaaaaagatcaaagccgcgcagcct
aagttgttcgattatttcttcaacatgcgccacaaacgcaagctgactgagctgattgat
atcgttaaccaaaccccgctgatgcatgtttccggtatgcttggccgtgaacgtcagtac
accagttggattgtgccgattgcttggcatcctaccaaccaaaatgcggtcattgtggtg
gatttgggtaaagaccctcagcctctgtttgatcttgatgcagaagcgttgcaagcacgt
ctctatactcgttatgaagatttagcgcccgatgaactgcccgttccggtgaagttagtg
catctcaacaaatgtcctattcttgctcccgccaagactctgaccgcagagaatgctgaa
aagattggtattgatcgcgagcagtgtcttgctcacttaaatgtgattcgtcagcatcca
gaaattcgtgaaaagctggtgacggtattcagtcaagagcgcgagtttgccaaagaaaac
aatgtggatagccaattgtatgaagggttcttctcgcctgccgatcgtgcggcgatggag
atcattcgcaccacatcaccggataatcttggcagcttagacatccaagtggcggataaa
cgtatcgaacctctgttgttccgttaccgcgctcgccattacccacataccttaaccgat
gccgagcagcgccgctgggcagcgcattgtcgtgactattttgaacgtaaccttgaaagc
tatatgctgaatttggaaaacttagttcatgaacatcagactgacgaaaagaaaatggcg
attttaaaatccgtttaccattacgttgaaaagctcgctcactaa
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