Vibrio mimicus: AL543_16340
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Entry
AL543_16340 CDS
T04381
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL543_16340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmi03019
]
AL543_16340
Enzymes [BR:
vmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL543_16340
Messenger RNA biogenesis [BR:
vmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL543_16340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Helicase_C_2
AAA_19
AAA_22
Cas3-like_C_2
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AMG05295
LinkDB
All DBs
Position
2:2174888..2176084
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AA seq
398 aa
AA seq
DB search
MPFSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL
EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL
IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ
FLLFSATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITVDKDTKSALLSHLINE
QQWDQALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYLVAT
GVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCMIES
RLGHLIERRVVEGFEPKKPVPISILNYVPKHKRVQQEQ
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcctttttctcaacttggattaagtgacgtcctgacccaaactgtggcgcgacttggt
taccaaacacctacccatattcaaacccaagccattccggtgatcttgcaaggtcgtgac
ctgattgcggcggcgcaaacgggcaccggtaaaactgccagtttcgtattgccgattctg
gagaagctccgtcaggggcaaacgcaacgtaagaagcgcgttcgtgcactgattttagtg
ccaacccgtgaactggcgatgcaagtggctgaaaaagttgagcaatacggcaaagacact
ggcttaaagagccttgcagtgtttggcggcgtggatgaacaggcacaaaagcagcgtttg
attgacggtgtcgatgtgctggtggcaacaccgggacgtttgatggacttgtatggtcaa
cgcgcagtctattttgaagaaatcgaaatggtggtgctggatgaagccgaccgcatgctg
gatatgggcttcattgaatcgatcaataaaatcattgattgcctaccaagtgaagtacag
ttcttactgttctccgcgacactgtcacgtaaagtgcgcgagttggccaaaacggcggtg
aatgatccgtacgaaatcagtatcgccgccaatcaagcctcaaaaagcaatatcagccaa
tggctgatcacggtcgataaggacaccaaatccgcattgctgagtcatttaatcaatgaa
cagcagtgggatcaggcgctgatttttattgaaaccaaacacggcgcagccaaactggtt
acgcaattagaaaagcgtggcattcaagccgaggcctttcacagtggccgtagccaagcc
atccgcgctcaactactggaagattttaagtcaggaaaaatcaaatatttggtggcaaca
ggtgtcgctgcgcgtggtattgatattgaccaactttcacgtgtggttaactacgatttg
ccatttccagccgatgaatatgtacaccgtattggccgaactgggcgcgctgatgcagtc
ggtgaagcgatctcgtttgtttcaaaagacaacttcaaaaacctgtgcatgattgaaagc
cgtttggggcacctaatcgaaagacgcgtagtggaagggttcgagccgaaaaagccagtg
ccgatttctattctgaactatgtgccgaaacacaagcgcgtgcagcaggaacagtaa
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