Vibrio mimicus: AL543_17945
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Entry
AL543_17945 CDS
T04381
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vmi
Vibrio mimicus
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vmi03032
]
AL543_17945 (topA)
03400 DNA repair and recombination proteins [BR:
vmi03400
]
AL543_17945 (topA)
Enzymes [BR:
vmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AL543_17945 (topA)
DNA replication proteins [BR:
vmi03032
]
Prokaryotic type
DNA Topoisomerases
AL543_17945 (topA)
DNA repair and recombination proteins [BR:
vmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AL543_17945 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
MetOD1
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AMG04743
LinkDB
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Position
2:complement(2540105..2542735)
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTTTPTGKAAATSTKKQSI
ADKEQQKREKERSALIKKMGVDPYHGWEANYQILPGKEKVVAELQKLAKDADSVYLATDL
DREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFQQPGELNMDGVNAQQARRFMD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQ
DFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTSSKPSAPFITSTLQQA
ASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEALDNVRGYITKHYGEAYLPSQP
NVYGSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTT
VSVKAAEFTLKAKGRILKFDGWTRVQRPLGKNEDQILPPVKVGDNLKLVSLDPKQHFTKP
PARFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDEN
FDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQDESLGGMKPNHIV
MTNILCPTCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETA
ALRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGFIVEEGEFKVKGYEGPMVECDKC
GSDMVLKNGRFGKYMGCTNDACKNTRKILKNGEVAPPKEEPVHFPELPCENSDAYFVLRD
GASGLFFAASNFPKSRETRAPLVEELKRFAERLPEKYQYLTSAPAQDPDGLPAVVRFSRK
EKEHYVRTETDGKPSGWMAIYQEGKWLVTDKRKNAK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatcgtcgagtcgccagccaaggctaaaaccatcaataagtac
cttggtaaagactttatcgtgaaatccagtgtgggacacgttcgtgatctgcctacggca
ggacaaactaccacaccaaccggtaaagctgcggccacttcgactaaaaagcaatctatc
gctgataaagagcagcaaaagcgtgaaaaagagcgctcagcactgatcaaaaagatgggt
gtcgatccgtatcacggttgggaagcgaattatcaaattctgcccggcaaagagaaagtg
gtggcagagctgcaaaagctcgcgaaagacgcagacagcgtttatctcgcaaccgacttg
gaccgcgagggagaggccatcgcttggcaccttcgtgagatcatcggcggcgatgaaaag
cgatacaaacgagtagtatttaacgagatcaccaaaaacgcgattcagcaggcattccaa
cagcctggagaattgaatatggatggcgtaaacgctcagcaagcgcgtcgtttcatggat
cgcgtggtgggcttcatggtttcaccactgctatggaaaaaagttgcacgtggcctttct
gcaggtcgcgtacagtctgttgcagtgaaactcttggttgagcgtgagcgcgaaatcaaa
gcatttgtccctgaagagttttgggacatcaacgcggatacgttgaccgcagacaagcaa
gatttccgtctgctggtggcacaaaaagatggcctagcgttcaagccagtgaacgaaact
gaagctttggctgccgttgctgcgttgaacaaagcacaatatgaagtgtgcaaacgcgaa
gacaagccaacgagcagcaaaccaagtgctccatttattacttcaaccttgcagcaagcg
gcgagtacacgccttggctacggggtgaaaaagaccatgatgctcgctcagcgtctgtat
gaagcgggttacattacctatatgcgtactgactcaactaacttgagcgcagaagcgcta
gacaatgtacgtggctatattactaagcattacggtgaagcttatttaccgagtcagccg
aatgtgtatggcagcaagcaaaatgcacaagaggcgcacgaagcgattcgtccttcggat
gtcactgtcactgctgacgatctggaagggatggaagcggatgcgcacaaactgtatgcc
ctgatctggaatcaatttgtcgcgtgtcaaatgacaccggcgcaatacgattcaaccaca
gtcagtgtgaaagcggctgaatttacgctcaaagcgaaaggtcgaattctgaagtttgat
ggttggactcgcgtacagcgtcctctgggtaaaaatgaagatcagatcctgccgccagtg
aaagtgggtgacaatctaaaattagtcagcctagatccgaaacagcacttcactaagccg
ccagcacgttttactgaagccgctttggtcaaagagcttgaaaagcgcgggattggtcgt
ccgtcaacctacgcttcgatcatctctacaattcaagaccgcggttatgtgaaagtcgat
cagcgtcgtttcttcgcggaaaaaatgggtgaaatcgtgaccgatcgtctggatgaaaat
tttgatgatctgatgaactacgactttacggcgcgtatggaagagaagctcgaccaaatc
gcagaaggtgaagtgaactggactgcggtgctggatgaattctttgctgatttcagtcgt
gatttagaaacggccgagcaagatgaaagtttaggtggcatgaagcctaaccacatcgtg
atgaccaatattttgtgtccgacttgctcacgtccaatgggaatccgtacggcatcgaca
ggcgtgttcttaggttgttctggttatgcattgccaccgaaagagcgctgtaaaaccacc
atcaacttgggtgacgaagaaggcatcatcaacgttttagaagaagatgttgaaaccgca
gcactgcgtgccaagaaacgttgtccgatttgtgaaaccgcgatggatgcgtatctgatc
gatgataagcgtaagctgcacgtttgtggtaacaacccgaactgtgaaggctttatcgtt
gaagaaggtgagtttaaagtcaaaggctatgaaggcccaatggttgagtgcgacaagtgc
ggctcagacatggtgctcaaaaatggccgctttggtaagtacatgggctgtaccaacgac
gcttgtaaaaacacgcgtaagattctgaaaaatggcgaagtagcgccaccgaaagaagag
ccagtacattttcctgaattgccgtgtgaaaactcagatgcgtattttgtgctgcgtgat
ggggcgtctggtctgttctttgctgccagcaacttccctaaatctcgtgaaactcgtgca
cctctggtggaagagttgaagcgtttcgcagaacgtttgccagagaaatatcagtatctg
acgtctgctccggcgcaggatcctgatggtttacctgctgtagtacgtttctctcgtaaa
gagaaagagcattacgtgcgtactgagaccgatggcaagccgtcaggttggatggcgatt
taccaagaaggtaagtggttagtgactgataagcgtaaaaacgccaaatag
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