Vibrio mimicus: AL543_19425
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Entry
AL543_19425 CDS
T04381
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vmi
Vibrio mimicus
Pathway
vmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL543_19425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmi03019
]
AL543_19425
03009 Ribosome biogenesis [BR:
vmi03009
]
AL543_19425
Enzymes [BR:
vmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AL543_19425
Messenger RNA biogenesis [BR:
vmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AL543_19425
Ribosome biogenesis [BR:
vmi03009
]
Prokaryotic type
rRNA processing factors
AL543_19425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMG05335
LinkDB
All DBs
Position
2:2872224..2875328
Genome browser
AA seq
1034 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLKHWGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERA
LEHIRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLAL
SVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETP
HFEVIRVRDGEEQDILSYLIPKKLEAMKEAEGKETPDVELKPKRIEEPVLKGFAAPAEAV
PAPAPKAKAEPQRQVETVQPAQPGLFSRLFKAIANLFSPAPEAAKAEAAVAQSNEQEKPR
RERNERNDRRRNPRDKNRRRGNEESSERNDKEGATNNRKPQDRKPKQERGERTERNERPE
TERAERQDRRNKRDESKTAKLLEQGRQLAAEAQQQEVKTAEPKEEKAAVVKERRQRRKLT
KQIRVKDQIAAEELDNLQSAPISNEFEAPASVNLPATDDFADSTQDENEQDDQKQRRNRR
SPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRNETAEVA
QHVANVTPSVVVESVKVEEAPRTLGGFAFPEMAMGKVILRREPAVAEPAPVVQEPAVIAE
PVTETVVEPVEQIVVETPVADIPAVEVPAPVVNEEEATPAVQPVVEDKVVTEKPAEQIKV
VKPAKASNTKLTAKAVIEQPSASSPMTKAPGSQEISEVLVNAAPLRAERYQARGAGSQVA
RNQASAAMAKPQSF
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcaaaaagaagagttgcgtgtcgcgttggtcgat
ggccaacgtctgttcgatctggatattgaaagtccggggcacgaatcgaaaaaagcaaat
atctacaaaggccgcattacccgtattgaacccagtctggaagccgcattcgttgattac
ggcgctgaaagacacggtttccttcctctcaaagaaattgctcgtgaatacttccctgat
ggttacagctaccaaggccgtccaaacatcaaagacgttctgaacgaaggtcaggaagtg
atcgtgcagatcgaaaaagaggagcgcggtagtaaaggggctgcactgacaacctttatc
tctctagcgggcagctatttagttctgatgccaaataaccctcgtgctggcggtatttct
cgtcgtatcgaaggtgatgagcgcactgagcttaaatcggcactcagttctcttgaacta
ccacaaggtatgggcctgattgtccgtactgcaggtgttggtaagagtgcagaagagcta
gagtgggacttaaatgtactgctcaagcactggggtgcaattaaacaagcctcagattct
aaccctgcacctttccttatccaccaagagagtaacgtgattgttcgtgcgatccgtgac
tacttgcgtcgtgatattggtgaaattcttatcgacagcaccagcatttacgaacgtgca
cttgagcatattcgtttagtgcgtcctgacttcgtcaaccgtgtgaaaaaatacgaaggc
gaagtaccgctgttcagtcatttccaaattgaaagtcagatcgaatccgctttccaacgt
gaagttcgtctgccttctggtggctcaatcgtcattgacccaaccgaagccctgacttct
attgacatcaactctgcccgcgcgactaaaggtggcgatattgaagagaccgctctcaat
accaacctagaagcagcggaagaaattgcacgccaactgcgcttgcgtgaccttggtggt
ctggtcgttatcgactttatcgatatgactcctgtacgccaccagcgtgaagtagaaaac
cgtctgcgtgaagcggtacgtgttgaccgtgctcgtgtacaaatcggccgtatttctcgc
ttcggtctgctagaaatgtcacgccaacgtttgagtccttctttagcagaagctagccat
cacatctgtccgcgctgtaaaggtactggtgtaattcgtgataacgaatctttggcactt
tctgtattacgtttgattgaagaagaagcactgaaagacaacacttctcaagtgcttgct
gttgtgcctgtttctattgcttcttacttgctgaacgagaaacgtcgctcaatcaaccac
attgaaaaagctcaacaagttcgcatcactatcgtgccaaattccgacatggaaactccg
cactttgaagtgatccgtgtacgtgacggtgaagagcaagacatcctgtcttacttgatc
ccgaaaaagctggaagcgatgaaagaagcagaaggcaaagaaacaccagatgttgagctt
aagccaaaacgtatcgaagaacctgtgctaaaaggctttgctgcaccagctgaagccgta
cctgcacctgcgccaaaagctaaagcagaaccgcagcgacaagttgaaacggtacaacct
gctcaaccgggcttattcagccgcttattcaaagcgattgctaacttgttctctcctgca
cctgaggctgcaaaagccgaagcggctgtagcgcaaagcaacgagcaagagaagccgcgt
cgtgagcgcaatgagcgtaatgatcgccgtcgtaatcctcgtgacaaaaaccgccgccgc
ggtaatgaagagagcagcgagcgtaacgataaagaaggcgcgacaaataatcgtaagcca
caagatcgtaaaccgaagcaagagcgtggtgaacgtacagaacgcaatgagcgtccggaa
acggaacgtgcagagcgtcaagatcgccgtaacaaacgtgacgaaagcaaaactgctaag
ttgctagagcaaggtcgtcaattggcggcagaagctcagcagcaagaagtgaaaacggct
gagccaaaagaagagaaagctgcagttgttaaagaacgtcgtcaacgccgtaagctcacc
aagcaaattcgcgtaaaagatcagattgcggctgaagagttagacaatcttcaatcagcg
cctatcagcaatgagttcgaggctcctgcatcagtcaatctgccagcaacagatgatttc
gcagattcaactcaggatgagaacgagcaagacgatcagaaacaacgccgcaatcgccgc
tctccacgccatttacgtgcaagtggtcagcgccgccgccgtggtcgtgatcgtcgtcct
aacccattccgcctacgtaaaggtggggttgcctctcctgagatggcaatgggtaaagtg
atgcctcgttacgatttagcgccgcgtccgcaatctcgcaatgaaaccgctgaagtggct
caacatgtagctaatgtcaccccatctgtcgtggtagaaagcgtaaaagtagaagaagct
ccgcgcactttaggtggctttgctttcccagaaatggcaatgggtaaagtgatcctacgc
cgcgaacctgctgtagccgaacctgctccagtcgtgcaagagcctgcggttattgcagag
cccgttactgaaactgttgtagagccagttgagcaaatcgtagttgagactccagtcgct
gacatcccagcagttgaagttccagctccagtggtgaatgaagaagaagctactcctgca
gttcagcctgttgttgaagataaagtggttaccgaaaaaccagctgagcaaattaaagtt
gtgaagcctgcgaaagcgagcaacacaaagctcactgctaaagctgtaatcgagcaacct
agtgcatcatcaccgatgactaaagcaccgggttcacaagagatcagtgaagtgttggtt
aacgcagcgccactacgtgcagagcgttatcaggcacgtggtgcgggtagtcaagttgcg
cgtaatcaagccagcgcagctatggccaaaccacaaagcttctga
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