Vulcanisaeta moutnovskia: VMUT_1679
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Entry
VMUT_1679 CDS
T01440
Name
(GenBank) 3' exoribonuclease
KO
K12589
exosome complex component RRP42
Organism
vmo
Vulcanisaeta moutnovskia
Pathway
vmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VMUT_1679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmo03019
]
VMUT_1679
Messenger RNA biogenesis [BR:
vmo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
VMUT_1679
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
VMUT_1679
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ADY01883
UniProt:
F0QUH4
LinkDB
All DBs
Position
complement(1664724..1665575)
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AA seq
283 aa
AA seq
DB search
MLSVTQEKGVIPKLKQDVMRKMIEQGVRIDNRGLNDYRELSIRVGVVRTADGSSLVSLGN
TKVMAGVKVEVGKPFEDTPDEGALIVNLEIAPAASPDIEPGPPDENAIEIARVVDRAIRH
SGFLNFKSLSIVTGRHAWFLWVDIYVLNHDGNLVDASTIAAITALMNTALPKVELDPAGN
ILRIDRSNKSPLALNVDKLPLTITHAKLGNFLLVDPTREEEDLSDGIYITGIAGGNVVAI
QKVTGAFTKDEVNYMISNSVNQYVKLKNVVTSIMANPQTDLKL
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtaactcaggagaaaggtgttattccgaagcttaagcaagacgttatgagg
aaaatgattgagcagggtgttaggattgataataggggattgaatgattatagagaatta
agtattagggttggtgttgtgaggaccgccgatggaagctccctagtatccctcggtaat
actaaggtgatggctggggtaaaggttgaggttggaaaacccttcgaagatactccagat
gagggcgcattaatagtaaacctggaaattgcaccagctgcatccccagacatagagcct
ggaccacctgatgagaatgccattgagattgccagggtagtagatagggcaataagacat
agtggttttctgaattttaagtcattatcaatagtaacgggtaggcacgcatggttcctt
tgggttgacatatacgtacttaaccatgatggcaacctagtggatgcatccacaatagcc
gccataaccgcattaatgaatactgcattacctaaggtagagcttgacccagcaggtaat
atattgaggatagacaggagcaataaatcgcctttggcacttaatgtcgataaattacca
ttaacaataacccacgccaagctagggaacttcctactggtagacccaacgcgggaggag
gaggatctatccgacggaatttacataactggcatagctgggggtaatgtcgtggctata
caaaaggttactggtgctttcactaaggatgaggtaaattacatgattagtaattctgtt
aatcaatacgtaaagctcaagaacgtggtaacgagtattatggcgaacccgcaaacggac
cttaaattgtga
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