KEGG   Vulcanisaeta moutnovskia: VMUT_2111
Entry
VMUT_2111         CDS       T01440                                 
Name
(GenBank) RNA binding S1 domain protein
  KO
K07573  exosome complex component CSL4
Organism
vmo  Vulcanisaeta moutnovskia
Pathway
vmo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vmo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VMUT_2111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vmo03019]
    VMUT_2111
Messenger RNA biogenesis [BR:vmo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     VMUT_2111
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     VMUT_2111
SSDB
Motif
Pfam: ECR1_N Zn_ribbon_3 Prok-RING_1 DUF7575 Zn_ribbon_LysW Zn_Ribbon_YjdM DZR Zn_ribbon_9 A2L_zn_ribbon DUF7577 Zn_ribbon_RPAB4 HypA Zn_ribbon_TiaS Cas12f1-like_TNB Zn_ribbon_8 Zn_ribbon_NUD Zn_ribbon_DUF2089 DUF7130 PSV_ORF131-like_dom ZNF512_C2HC Zn_ribbon_6 Zn_Tnp_IS91 Zn_ribbon_IS1595 DUF1451 Ribosomal_L32p Zn_Ribbon_TF HpuA ECR1_N_2 DUF6165 SHLD2_C Ribosomal_L27 C1_1
Other DBs
NCBI-ProteinID: ADY02308
UniProt: F0QX19
LinkDB
Position
complement(2069613..2070182)
AA seq 189 aa
MDKEIVAPGDVIGVAEEYLPGENVEVDTDGKLRAQVMGIVVRNERDHVVSVKPLRSSNSL
LRVNDVVYGRVIAIPNDRVVIVKIIGVENNGGKMALKDDVTGIIPPSQLLNGKSSNASEI
LGIGDIIRARVISRDPPYTLTLRDAQLGVVYARCPRCGHELKLKGNDLLQCPNCGAVVRR
KVSLIEYWI
NT seq 570 nt   +upstreamnt  +downstreamnt
atggataaagaaatagttgcaccgggagatgttataggtgtcgctgaggaatatttgcct
ggggagaatgttgaagttgatacggatggtaagttgagggctcaggttatgggtattgta
gttaggaatgagcgggaccatgtagttagcgttaaacccttaagaagcagtaattcatta
ttaagggtaaatgatgtcgtttatggcagagtcatagcaataccaaatgatagggttgtt
attgtgaagataattggtgttgagaataatggcggcaagatggcgttgaaggatgatgtg
acgggcataataccgccatcccaattactaaatggtaagtcaagtaacgccagtgaaata
cttggaattggtgatataattagagctagagtaatatctagggatccgccatatacgtta
accctaagggatgcgcaacttggtgttgtttatgcaagatgccctagatgcggtcatgaa
ttgaaattaaagggcaatgatttgttgcaatgccccaattgtggtgctgtggttaggcgt
aaggttagccttattgaatactggatatga

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