Vitreoscilla massiliensis: LVJ82_00315
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Entry
LVJ82_00315 CDS
T08422
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vms
Vitreoscilla massiliensis
Pathway
vms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ82_00315 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vms03019
]
LVJ82_00315 (pnp)
03016 Transfer RNA biogenesis [BR:
vms03016
]
LVJ82_00315 (pnp)
Enzymes [BR:
vms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LVJ82_00315 (pnp)
Messenger RNA biogenesis [BR:
vms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LVJ82_00315 (pnp)
Transfer RNA biogenesis [BR:
vms03016
]
Prokaryotic type
tRNA degradation factors
LVJ82_00315 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
UOO89459
UniProt:
A0ABY4E1T3
LinkDB
All DBs
Position
55823..57949
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AA seq
708 aa
AA seq
DB search
MFNKHVKSFQYGNQTVTIETGEIARQATAAVKVAMGDTVVLVSVVAASKIKEGQDFFPLT
VDYFERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYNDIQIIAMVVSV
DPEIDSDIPAMIGASAALVLSGVPFAGPIGAARVGYVNGDYVLNPTKTQLTESQLDLVVA
GTSKAVLMVESEAKELSEAVMLGAVVYGHDQMQTVITAINELADEVNPAVWEWTAPVENV
ELKAKVTGLAGVQIAEAFKIRSKQERTAKLNEAWAVVEAALITEETATLEVNEIRTIFKH
LEAEIVRGQILDGQPRIDGRDTRTVRPIDIQTNVLPRTHGSALFTRGETQALATATLGTQ
RDEQIIDALSGEYTDRFIMHYNFPPYSTGEVGRVGIPKRREIGHGRLAKRALIAVLPAQE
DFNYTMRVVSEITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGSKFAVLT
DILGDEDHLGDMDFKVAGTENGVTALQMDIKIQGITKEIMHIALEQAKEGRAHILGLMKE
AVEGPQEMSTHAPRLYTLKINQDKIRDVIGKGGETIRGIIKETGTEINIEDDGTVVIAAT
TAEAGEAAKKRIEEITAEVEVGKTYAGTVLKILDNNVGAIVSVMPGKDGLVHISQIAHER
VKNVSDYLQVGQTVNVKALEVDDRGRVRLSIKALLEKPEAEAKEPAAE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaacacgttaaatctttccaatacggcaaccaaaccgtgaccattgaaacc
ggcgaaatcgcacgccaagccactgcagcggtgaaagttgccatgggcgacaccgtggta
ttggtgtctgtggttgcggccagcaaaatcaaagaaggccaagacttcttcccattgact
gtggattactttgaacgcacgtatgcggccggtaaaatccctggtggcttcttcaaacgc
gaaggcaaacaatctgaaaaagaaattttgaccagccgtttgatcgaccgtccaattcgt
cctttattcccagaaggcttctacaacgacatccaaatcatcgcgatggtggtgtctgta
gaccctgaaatcgattctgacatccctgccatgattggtgcttctgctgctttggtattg
agcggtgtgccttttgctggccctatcggcgcggctcgcgtcggttatgtgaatggcgat
tacgtgttgaaccctaccaaaacccaattgaccgaaagccaattggacttggtagtagcc
ggtacatctaaagccgtattgatggtggaatctgaagccaaagaattgtctgaagcggtg
atgttgggcgcggtggtttatggtcacgaccaaatgcaaaccgtgattactgccatcaac
gaattggctgacgaagtgaacccagcggtatgggaatggactgcgccagtagaaaatgtg
gaattgaaagccaaagtcactggtttggctggcgtgcaaatcgctgaagccttcaaaatc
cgttctaaacaagaacgcacggccaaattgaacgaagcttgggcagtggttgaagcggct
ttgattactgaagaaaccgccactttggaagtgaacgaaattcgcaccatcttcaaacat
ttggaagccgaaatcgtgcgcggtcaaatcttggatggtcaacctcgcatcgacggtcgc
gatacccgcaccgtgcgtcctatcgacatccaaaccaatgtgttgccacgcacccacggt
tcggctttgttcacccgcggtgaaacccaagccttggccactgccactttgggcacgcaa
cgcgatgagcaaatcattgatgctttgagcggcgaatacaccgaccgcttcatcatgcat
tacaacttccctccgtactctactggtgaagtgggccgtgtgggtattccgaaacgccgc
gaaatcggtcacggtcgtttggccaaacgtgcgttgattgccgtattgccagcacaagaa
gatttcaactacaccatgcgcgtggtgtctgaaatcaccgaatctaacggttcatcttct
atggcttctgtgtgtggtggttgcctgtcattgttgtctgcaggcgtgcctttgaaagca
cacgtggctggtatcgccatgggcttgattttggaaggctctaaatttgcggtcttgacc
gacatcttgggcgacgaagaccacttgggcgacatggactttaaagtggccggtaccgaa
aacggtgtcactgctttgcaaatggacatcaaaatccaaggcattaccaaagaaatcatg
cacatcgctttggaacaagccaaagaaggccgcgcgcacatcttgggcttgatgaaagaa
gcggttgaaggtcctcaagagatgtctacacacgcaccgcgtttgtacaccttgaaaatc
aaccaagacaaaatccgcgatgtgattggcaaaggtggtgaaaccatccgtggcatcatc
aaagaaaccggcaccgaaatcaacattgaagacgacggtactgttgtcatcgctgcaacc
acggccgaagccggcgaagccgcgaaaaaacgcatcgaagaaatcactgcggaagtggaa
gtgggcaaaacctacgctggtaccgtattgaaaatcttggacaacaatgttggcgccatc
gtgtctgtgatgcctggcaaagacggcttggtacacatcagccaaatcgcgcacgaacgc
gtgaaaaacgtgtctgactacttgcaagtgggtcaaaccgtgaacgtgaaagccttggaa
gtggacgaccgcggtcgcgtgcgtttgtctatcaaagctttgttggaaaaacctgaggca
gaagccaaagagccagcagcagaataa
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