Vitreoscilla massiliensis: LVJ82_00905
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Entry
LVJ82_00905 CDS
T08422
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vms
Vitreoscilla massiliensis
Pathway
vms02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vms00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LVJ82_00905 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vms03021
]
LVJ82_00905 (rpoD)
Transcription machinery [BR:
vms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LVJ82_00905 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GTP_EFTU
DUF601
Motif
Other DBs
NCBI-ProteinID:
UOO89575
UniProt:
A0ABY4E1C7
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Position
145851..147812
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AA seq
653 aa
AA seq
DB search
MANQNPKKQELEQDTHDDAPLSVEEQRARLRQLIILGKERGYITYAEINDHLPDDVSDTD
QIENIVSMISGLGIQVSEEAPDADSLLMNDGATGVTDEDAVAEAEAALSSVDSEFGRTTD
PVRMYMREMGQVDLLTREDEIIIAKKIERALRNMVEAISACPSTIEEILGLMQRVRDDEI
RVDEVVEAIIDPEEEEAALNAIAEEASEAALAEDDEAEADVDAEEDEDEEVGEEDGAAIA
SANLEELRQNALAHFEIVSVKFDNMVVVLEKHGSAHPEYVAARQAITEDLLKVRFATRQI
ESLCESLRQRVNTIRHLERGIRDICVNNVHMPLEYFREHFAPNMVDVNWVENELDRSHKD
WNNALERFKFSIMEKQTKLLDLQKLSRLSIEELKDINKDMARGERESASAKQEMIQANLR
LVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIAD
QARTIRIPVHMIETINKMNRISRQYLQETGEEPDSAKLAELMEMPEDKIRKIMKIAKEPI
SMETPIGDDDDSHLGDFIEDANNVAPSDAAMYSGLREVTKEVLESLTPREAKVLRMRFGI
DMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLKSFLDSEENKQ
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatcaaaaccctaaaaaacaagaacttgagcaagacactcatgatgatgcacct
ttgagtgtggaggaacaacgtgcgcgtttgcgtcagttgattattttgggcaaagagcgc
ggctacatcacttatgccgagatcaatgaccatttgccagacgatgtgtccgataccgat
caaatcgaaaacatcgtcagcatgatttctggcttgggcatccaagtatcggaagaagca
cccgatgccgattcattattgatgaacgatggcgccactggtgtgaccgacgaagatgcc
gtggccgaagccgaagctgctttgtctagcgtggattcagaatttggccgcaccaccgac
cctgtgcgcatgtacatgcgtgaaatgggtcaagtggacttattgacccgtgaagacgaa
atcatcattgccaaaaaaattgaacgcgccctgcgcaatatggtggaagccatcagcgcc
tgccctagcaccattgaagaaatcttgggcttgatgcaacgcgttcgcgatgatgaaatt
cgtgttgacgaggtggttgaagccattatcgatccagaggaagaagaagcggccttaaac
gccatcgccgaagaagcctctgaagcggctttggcagaagacgatgaagccgaagccgat
gtggatgccgaagaagacgaagacgaagaagtgggcgaagaagatggtgctgccatcgcc
agcgccaacttggaagaattgcgtcaaaacgccttggcccattttgaaatcgtgtcagtg
aaatttgacaatatggtcgtggtgttagaaaaacatggcagcgcccatcctgaatacgta
gctgcacgccaagccattaccgaagacttgttaaaagtacgttttgctacccgccaaatc
gaaagcctgtgtgaaagcttgcgccaacgcgtgaacaccatccgccatttggaacgcggc
atccgtgatatttgtgtcaacaatgtgcacatgcctttggagtatttccgtgagcatttc
gcacctaatatggtcgatgtgaactgggttgaaaatgagttagaccgcagccacaaagat
tggaacaatgcgttagagcgtttcaaattctccatcatggaaaagcaaaccaaattattg
gatttgcaaaaactgtcgcgcttgtcgattgaagaattaaaagacatcaacaaagacatg
gcacgcggcgaacgtgaatctgcttcggccaaacaagaaatgattcaagccaacttgcgt
ttggtgatttcgattgcgaaaaaatacaccaaccgcggtttgcaattcttggacttgatt
caagaaggcaatatcggcttgatgaaagcggtagacaaatttgaataccgccgtggttac
aaattctcgacttacgccacttggtggattcgtcaggccattacccgctcgattgccgac
caagcacgcaccatccgtattccggtgcacatgattgaaaccatcaataaaatgaaccgc
atttcacgccaatacttgcaagaaacgggcgaggagccagattctgccaaattggctgaa
ttgatggaaatgccagaagacaaaatccgcaaaatcatgaagattgccaaagagcctatc
tccatggaaaccccaattggtgatgatgatgattcacacttgggcgacttcattgaagat
gcgaacaatgtcgccccttctgatgccgccatgtactcaggcttgcgtgaagtgaccaag
gaagtcttggaaagcttaaccccacgcgaagccaaagtcttgcgcatgcgttttggtatt
gatatgaataccgatcacacattggaagaagtgggcaaacagtttgatgtgacccgtgaa
cgcatacgtcagattgaagcaaaggccttgcgcaaattgcgtcaccctactcgctctgag
cgcttaaaaagtttcttagacagtgaagaaaataagcaataa
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