Vitreoscilla massiliensis: LVJ82_02355
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Entry
LVJ82_02355 CDS
T08422
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vms
Vitreoscilla massiliensis
Pathway
vms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ82_02355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vms03019
]
LVJ82_02355
Enzymes [BR:
vms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVJ82_02355
Messenger RNA biogenesis [BR:
vms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVJ82_02355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
Cas3-like_C_2
SUa-2TM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UOO89849
UniProt:
A0ABY4E2V6
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All DBs
Position
complement(448288..449739)
Genome browser
AA seq
483 aa
AA seq
DB search
MNAFASLGLSNEIVQALDEQGYTTPTPIQSAAIPKALAGHDLLAAAQTGTGKTAAFMLPS
LERLKRFANTSASPAMHPVRMLVLTPTRELADQIDANVTSYIKHLPLKHTVVFGGTNMDA
QAQALRSGREIVVATVGRLLDHVGQKNIQLNKVDILVLDEADRMLDMGFIDDIRKIIAML
PKNRQILLFSATFAPEIKRLANDFMHQPETIEVAAQNTTNKNVEQHVIAVDGSRKRHLLE
RLIVDLDMSQVIVFCKTKVSADQVTRDLVRKNISAKAIHGDKAQQQRTETLAAFKEGGVR
VLVATDVAARGLDINELPFVINYEMPTNAEDYVHRIGRTGRAGAEGVALSLMEESEQKMF
EAICKLTKQKLPLDKIEGFEPRWMRDEQAHAVKLSGDGKAVMKEVAPAKDKNREVAKEAA
SDASKDKPRGNAVRKLNTDIKAVAKHTDERPDAPLIKGRRRRGVRHQRQTCALLQANFGA
NRR
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcttttgcatcattgggtttatcgaatgaaattgtccaagcattggacgaacaa
ggctataccacaccaacaccgattcaatctgccgccatacccaaggctttggcggggcat
gacttgcttgccgccgcgcaaaccggtaccggtaaaaccgccgcgttcatgttgccgagc
ttggagcgcttgaaacgctttgccaataccagcgcctcaccggccatgcatccggtgcgc
atgttggtgttaacgcccacacgcgaattagccgaccaaatcgatgccaatgtcacgtct
tacatcaaacacctgccgctcaaacacacggtggtgttcggtggcaccaatatggatgcg
caagcgcaagccttgcgcagcggccgtgagattgtggtggcgactgttggtcgtttgctt
gaccatgttggccagaaaaacatccaattgaacaaagttgacattttggtgctggacgaa
gccgaccgcatgctcgacatgggtttcattgacgacatccgcaaaatcatcgccatgttg
ccgaaaaaccgccaaattctgctgttttcagcgacgttcgcgccagaaatcaaacgtttg
gccaacgatttcatgcaccagcctgaaaccatcgaagtggcggcgcaaaacaccaccaac
aaaaacgtcgagcaacacgtcatcgccgttgatggcagccgcaaacgccatttgcttgag
cgcttgattgtcgatttggacatgtcgcaagtgatcgtgttttgtaaaaccaaggtcagc
gccgatcaggtgacgcgtgacttggtgcgtaaaaacatcagcgccaaagccattcatggc
gacaaagcgcagcaacagcgcaccgaaaccttggccgcgttcaaagaaggcggtgtgcgt
gtattggtggccaccgatgtggcggcgcgtggtttggacatcaatgaattgccattcgtc
atcaattacgaaatgccgaccaatgccgaagactatgtgcaccgcatcggtcgtaccggt
cgcgctggtgccgaaggcgtggctttgtcgttgatggaagagtctgaacaaaaaatgttt
gaggcgatttgcaaattgaccaagcaaaaattgccattggacaaaatcgaaggctttgag
ccacgttggatgcgtgacgagcaggcgcatgcggtgaaactcagtggcgatggcaaagcg
gtgatgaaagaagtcgcacctgccaaagacaaaaaccgcgaagtggccaaagaagcggcc
agcgatgccagcaaagacaagccgcgtggcaatgcggtgcgcaaactcaataccgacatc
aaagccgtggccaaacacaccgacgagcgtcctgatgcgccgttgattaaaggccgccgc
cgccgtggtgtgcgccaccaacgccaaacctgtgccttgttgcaagccaatttcggtgcc
aaccgccgttaa
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