Vitreoscilla massiliensis: LVJ82_02885
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Entry
LVJ82_02885 CDS
T08422
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vms
Vitreoscilla massiliensis
Pathway
vms02020
Two-component system
vms02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vms00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LVJ82_02885 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LVJ82_02885 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vms03021
]
LVJ82_02885 (rpoN)
Transcription machinery [BR:
vms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LVJ82_02885 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF677
PrkA
HTH_17
REST_helical
DUF3095
Motif
Other DBs
NCBI-ProteinID:
UOO89951
UniProt:
A0ABY4E2D9
LinkDB
All DBs
Position
complement(555362..556786)
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AA seq
474 aa
AA seq
DB search
MQNQLKLKQTQQLQLNPQLQQAIKLLQMSGLELDEAVEQALLENPLLERVENDFPEESFE
AEKSNNEAETVEFDANGDFEEDWQSLQLTAGLGSTGITYEGEFQDAFAQIEDNSDFRQFL
RDQVCEHQLSDSEVFAVRVLIEHLDEHGYLSTSLTEVVEHSPLEWFLEEEQLAIALAKLQ
RFEPAGVGASDLAESLLLQLQRMPEDETVTLAKLIVRQYFNVLTQPSNVTKLKKYLPMSA
AEIQTAVMLIQTLNPYPSSGYAHAEPTQYVLPDIRVFKKGSKWIAQLQRQSQPQIRVNEE
YAAVVEESGHSDLKRQMQEAKQLISGLEMRADTVLRVAEYVVEHQQDFFSHGPIALKPML
IKSVAEFLDLHESTISRAVNQKYLSCPQGLFELRWFFTQTATNSDGEGEDGISNRVIKTI
LEKLIGEEDKRKPLSDEKLAQKLLEHDIKIARRTVTKYRESLRIASASERKIRS
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaccaactcaaactcaagcagacacaacagctgcaattaaacccccaactgcaa
caagcgattaagctgttgcagatgtctggtttggagttggacgaagcagtggaacaggct
ttgttggaaaaccctttgttagagcgggtggaaaacgattttcctgaagaatcgtttgag
gccgaaaaaagcaataatgaagcggaaaccgttgagtttgatgccaatggtgactttgaa
gaagattggcaaagcctgcaattgactgccggtttgggctcgacaggcattacttacgaa
ggcgagtttcaggacgctttcgcccaaattgaagacaacagcgatttccgccaatttttg
cgtgaccaagtgtgtgaacaccaattaagcgacagcgaagtgtttgcggtacgggtgttg
attgagcatttggatgagcatggttatttgtcgaccagtttgaccgaagtggtagaacat
tcgccgttggaatggtttttagaagaagaacaattggcaatagccttggcgaaattgcag
cgatttgagcctgcaggtgtcggtgccagtgatttggccgaatctttgctgctgcaattg
cagcgcatgcctgaagacgaaaccgtgactctggccaaattaattgtgcgccaatacttt
aatgtgttgacccagcctagcaacgtcaccaagctcaaaaaatacctgccgatgagcgcg
gctgaaattcaaaccgcggtgatgttgatacaaacactgaatccatatccaagcagcggt
tatgcccatgccgagccaacgcaatatgtgttgcccgacattcgtgtgtttaaaaaaggc
agtaaatggattgcgcaattgcaacgacaaagccaaccgcaaatccgcgtcaatgaagaa
tacgcggcagtggtggaagagtcaggtcacagcgatttgaagcggcaaatgcaagaagcc
aaacagctaatcagtggcttggaaatgcgtgcagacacggtgttgcgtgtggccgaatac
gtggtcgagcaccaacaagactttttctcgcacggccccattgccttgaaacccatgctc
atcaaatcggtggccgaattcttggatttgcacgaatccaccatttcgcgcgccgtgaat
caaaaatacctcagctgtccgcaaggtttgtttgagttgcgctggttctttacccaaacc
gccaccaacagcgatggcgaaggggaagatggcatcagtaaccgcgtcatcaaaaccatc
ttggaaaagctaatcggcgaagaagacaaacgcaagcctttgtcagatgaaaagctggcg
cagaagctgttggaacacgacattaagattgcccgccgcacggtaacgaaataccgtgaa
agtttgcgcatcgcttctgccagcgaacgtaaaattcgcagttaa
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