Vitreoscilla massiliensis: LVJ82_06975
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Entry
LVJ82_06975 CDS
T08422
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vms
Vitreoscilla massiliensis
Brite
KEGG Orthology (KO) [BR:
vms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vms03016
]
LVJ82_06975
Enzymes [BR:
vms01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LVJ82_06975
Transfer RNA biogenesis [BR:
vms03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LVJ82_06975
Prokaryotic type
tRNA splicing ligases
LVJ82_06975
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4402
DUF2130
Motif
Other DBs
NCBI-ProteinID:
UOO90703
UniProt:
A0ABY4E5Y2
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All DBs
Position
1329076..1330293
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AA seq
405 aa
AA seq
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MNYNEIISEHSVPIKMWTQGVPVEAAAEQQLRNIASLPIIYKHIAVMPDVHLGKGATIGS
VIPSYKAIIPAAVGVDLGCGMMACKTTLVAADLPDNLLPLRLAIEQAVPHGREFNRKQRD
TGSWGRPPEEVNQAWAKLKGEFEVLCVKEPKLANTNNHNHLGTLGTGNHFIEICLDEHGS
VWVMLHSGSRGVGNAIGNRYIEKAKQDAERNNVHLPDQDLAYFEEGSEHFHDYVEAVDWA
QRFAQANREVMMQRVIAVMQKIITKPFQTHMEAINCHHNYVQKESHFGEDVYVTRKGAVS
AAKGQLGIIPGSMGAKSFIVRGKGNADSFNSCSHGAGRIMSRNEAKRQFTVDDQVAATLG
VECRKDSNVIDEIPMAYKDIDAVMQAQADLVEVVYTLKQVLCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaattacaacgaaatcatcagcgagcacagcgtgccgattaaaatgtggacgcaaggc
gtgccggtagaggccgccgccgaacaacaattgcgcaacatcgcgtccttgccgattatc
tacaaacacattgccgtgatgcccgatgtgcatttgggcaaaggtgccaccataggctcg
gtgattccgtcgtataaagcgattatcccagccgccgtcggcgtggatttgggttgcggc
atgatggcgtgcaaaaccactttggtcgccgccgatttgcccgacaatttgttgccgctg
cgtttggccatcgaacaagcggtgccacacggacgcgaattcaaccgcaaacagcgtgat
accggctcgtggggtcgtccgcccgaagaagtgaatcaggcatgggcgaaattaaaaggc
gaatttgaggttttgtgcgtgaaagagccgaaactggccaacaccaataaccacaaccat
ttgggtactttgggtacgggcaaccactttatcgaaatttgtttggacgaacacggcagc
gtgtgggtgatgttgcattcaggctcacgcggcgtcggcaatgccattggcaaccgttac
atcgaaaaagccaagcaagatgccgagcgcaacaatgtgcacctgcccgaccaagatttg
gcctattttgaagaaggttcggaacatttccacgattacgtcgaggccgtggattgggcg
cagcgttttgcccaagccaaccgcgaggtgatgatgcagcgcgtgattgcggtgatgcaa
aaaatcatcaccaaaccatttcaaacccatatggaagcgattaactgccaccacaattat
gtgcaaaaagagagccatttcggtgaggacgtgtatgtgacgcgcaaaggcgcggtatcg
gcagccaaaggccaattgggcatcatccccggcagcatgggcgcaaaaagctttattgtg
cgcggtaaaggcaatgccgacagcttcaacagctgcagccacggcgccggccgcatcatg
agccgcaacgaggccaaacgccaattcacagtagacgaccaagttgccgccacactaggc
gtggaatgccgcaaagacagcaatgtcatcgacgaaattccgatggcgtacaaagacata
gatgcagtgatgcaagcgcaagccgacttggtggaagtggtgtataccttgaaacaggtg
ttgtgtgtgaaaggctga
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