Vitreoscilla massiliensis: LVJ82_07625
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Entry
LVJ82_07625 CDS
T08422
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vms
Vitreoscilla massiliensis
Pathway
vms03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vms00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LVJ82_07625 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vms03021
]
LVJ82_07625 (rpoC)
03400 DNA repair and recombination proteins [BR:
vms03400
]
LVJ82_07625 (rpoC)
Enzymes [BR:
vms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LVJ82_07625 (rpoC)
Transcription machinery [BR:
vms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LVJ82_07625 (rpoC)
DNA repair and recombination proteins [BR:
vms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LVJ82_07625 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
ArnB_C
Motif
Other DBs
NCBI-ProteinID:
UOO90822
UniProt:
A0ABY4EBP3
LinkDB
All DBs
Position
complement(1448029..1452186)
Genome browser
AA seq
1385 aa
AA seq
DB search
MKALLDLFNPLQGAGADDEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLF
CAKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELASPVAHIWFL
KSLPSRLGMVLDMTLRDIERILYFEAFVVTDPGLTSLQRRQLLTEEDYYENLDEYGEEFE
AKMGAEGVRELLRTLDIENEIQVLRQELESTGSDTKIKKIAKRLKVLEAFQRSGMKLEWM
IMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKR
MLQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITV
GPYLRLHQCGLPKKMALELFKPFIFHKLEKLELANSIKQAKKLVEQEVPEVWDILEDVIR
EHPIMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
EEARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDKINGKGEGIMFADVKEVHRAY
QTRQVELGTKCIVRLTEYVKNEQGGFDPVVNRYETTVGRAILSTLLPKGLSFSHVNKALK
KKEISKLINASFRQCGLRDTVIFADHLMYTGYAYSTRGGISICVDDMEVPAAKAQLLGEA
NAEVKEIEEQYRQGLVTNGERYNKVVDIWGRTGDKIAKAMMDNLSVDKVFDRDGNEVDQE
SFNSIYMMADSGARGSPAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFISTH
GARKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSDGFVMKAVVQGGDVIEPLRD
RILGRVTAEDVVDPITNATLVESGTMLTEALVNEIDNSGVDEVKVRTPITCKTRYGLCAK
CYGRDLARGKLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAATQVESKSNGT
ARFSSQMRYVANNKGELIVIGRSCEVVIHDDVGRERERHKVPYGATLMVRDGEVITAGHV
LATWDPHTRPMITEHAGRVRFENIEEGVTVAKQTDEVTGLSTLVVIDGKRRGSQARVLRP
AVRLLDENGEEIHAPGSDTPVTMAFPIGAIITVREGQEIGKGDVLARIPQASTKTRDITG
GLPRVAELFEARTPKDAGMLAEVTGTVSFGKETKGKQRLVITDTDGIAVETLISKEKQVL
VHDGQVVNRGETIVDGAVDPHDILRLQGIEALARYIIQEVQEVYRLQGVKISDKHIEVII
RQMLRRVNIADSGETHFITGEQVERAEVMIENEKMLAEGKQPARIDNILLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLHYHRKRRQHTQAAE
TPAAE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgttagatttatttaaccccttgcaaggtgcaggtgcagatgatgaattt
gatgccatcaaaattggtatcgcatcacctgaaaccatacgctcatggtcgtatggcgaa
gttaaaaaacctgaaaccatcaactaccgtacgttcaagcctgaacgcgatggtttgttc
tgtgccaaaatttttggcccagtgaaagactacgaatgtttgtgcggtaagtacaaacgt
ttgaaattcaaaggcgtgacctgcgaaaaatgtggcgtggaagtgactttgtccaaagta
cgccgtgaacgcatgggtcacatcgaattggcttcacctgtagcgcacatctggttcttg
aaatcattgccatctcgtttgggcatggttttggacatgactttgcgtgacatcgaacgc
attttgtactttgaagcctttgtggtaaccgatcctggtttgacttctttgcaacgccgt
caattgttgaccgaagaagactattacgaaaacttggacgaatacggcgaagaatttgaa
gcgaaaatgggtgcagaaggtgtgcgtgaattgttgcgtaccctcgacatcgaaaacgaa
attcaagtattgcgtcaagagttggaatcgactggttctgacaccaaaatcaaaaaaatt
gcgaaacgtttgaaagtattggaagcgttccaacgctcaggtatgaaacttgagtggatg
attatggatgtattgccagtattgccacctgatttgcgtccattggtgccgttggatggt
ggtcgttttgccacttctgacttgaacgatttgtaccgccgcgtgattaaccgtaacaac
cgtttgaaacgtttgttggaattgcgtgcaccagacatcatcgtgcgcaatgaaaaacgc
atgttgcaagaagcagtagactcattgttggacaatggccgtcgcggtaaagcgatgacg
ggcgccaacaaacgtccattgaaatctttggcagacatgattaaaggtaagggcggtcgc
ttccgtcagaacttgctgggtaaacgtgtggactattcaggccgctctgtgattaccgta
ggtccttacttgcgtttgcaccaatgtggtttgcctaaaaaaatggcattggaattgttc
aaaccattcattttccataaattggaaaaattggaattggccaactccatcaaacaagcg
aaaaaattggtagagcaagaagtgccagaagtttgggacatcttggaagacgtgattcgc
gaacatccaatcatgttgaaccgtgcacctaccttgcaccgtttgggtattcaagcgttt
gaaccgatcttgattgaaggcaaagccattcaattgcacccactcgtttgtgcggcattc
aatgccgacttcgacggtgaccaaatggcggtacacgtaccattgtctttggaagcacaa
gaagaagcacgcaccttgatgttggcttctaacaatgtgttgtctccagccaatggtgag
cctatcatcgtaccttctcaagacatcgtcttgggtctgtattacatgacgcgtgacaag
attaacggtaaaggcgaaggcatcatgtttgccgacgtcaaagaagtacaccgtgcttat
caaacacgccaagtggaattgggtaccaaatgtatcgtgcgtttgaccgaatacgtgaaa
aacgaacaaggtggtttcgatcctgttgtgaatcgttacgaaaccacggttggtcgcgcg
attttgtcgaccttgttgcctaaaggtttgagtttctctcacgtcaacaaagcgttgaag
aaaaaagaaatctctaaactgattaacgcctcgttccgtcaatgtggtttgcgcgacacc
gtgattttcgccgaccatttgatgtacaccggttatgcgtactcaacccgcggtggtatt
tcgatttgcgtagacgacatggaagtgcctgcagcgaaagcgcaattgttgggcgaagcc
aatgccgaagtgaaagaaatcgaagagcaataccgtcaaggtttggtaaccaatggcgaa
cgctataacaaagtggtcgacatctggggccgtactggtgacaagatcgccaaagcgatg
atggacaacttgtctgtggacaaagtgtttgaccgcgacggtaatgaagtggaccaagaa
tcgttcaactccatttacatgatggccgactctggtgcccgtggttcgccagcacagatc
aaacagttgtcaggtatgcgtggtttgatggcgaaaccagatggttcgattatcgaaacc
ccaattacctctaacttccgtgaaggcttaacagtattacaatactttatttccactcac
ggtgcgcgtaaaggtttggccgatacggcgttgaaaacagcgaactcaggttacttgacc
cgtcgtttggtcgatgtgacccaagacttggtggtcatcgaagacgattgcggtaccagc
gatggtttcgtgatgaaagccgtggtacaaggcggtgacgtgattgaaccattgcgcgac
cgtattttgggccgtgtaacagctgaagacgtggtagacccgattaccaatgcaactttg
gtagagtctggcaccatgttgaccgaagccttggttaacgaaatcgacaactcaggtgtc
gatgaggtgaaagtacgcaccccaattacttgtaaaacccgttatggcttgtgcgcgaaa
tgttacggccgtgacttggcacgcggtaaattggtgaacactggtgaagcagtcggcgtg
attgcagcgcaatcgattggtgaaccgggtacacagttgaccatgcgtaccttccacatt
ggtggtgcagcgtctcgagcagccgcagcgacccaagtagagtctaaatctaacggtacg
gcacgtttctctagccaaatgcgttatgttgccaacaacaaaggcgagttgattgtcatc
ggccgttcttgtgaagtggtgattcatgatgatgtcggtcgtgagcgtgaacgtcataaa
gtgccttacggtgcgacgttgatggtgcgtgatggtgaagtgattaccgcgggccatgta
ttggccacatgggatccacatacccgtccaatgattaccgagcatgcaggtcgtgtgcgc
ttcgagaacatcgaagaaggcgtgactgtcgcgaaacaaaccgatgaagtgactggtttg
tctaccttggtggtgattgatggcaaacgccgtggttcacaagcgcgtgtattgcgtcca
gcagtgcgcttgctcgatgaaaacggtgaagaaatccacgctccaggttcggatacccca
gtgaccatggcattccctatcggtgcgatcattaccgtgcgtgaaggtcaggaaattggc
aaaggtgatgtgttagcgcgtatcccacaagcttctaccaaaacccgtgacattaccggt
ggtttgcctcgtgtagcagaattgttcgaggctcgtacaccaaaagacgcaggtatgttg
gcagaggtaactggtaccgtttcctttggtaaagaaaccaaaggcaaacaacgcttggtg
attaccgacactgatggcatcgctgtagaaaccttgatctcgaaagagaaacaagtgttg
gtgcatgatggtcaagtggtgaaccgtggtgaaaccattgtcgatggcgcagttgatccg
cacgacatcttgcgtttgcaaggtatcgaagccttggctcgctacatcatccaagaagtg
caagaggtttaccgcttgcaaggtgtgaagatttccgacaaacacattgaagtgatcatt
cgccaaatgttgcgtcgtgtgaacatcgctgattctggtgaaacccatttcattaccggt
gagcaagttgagcgcgccgaagtgatgatagaaaacgagaaaatgttggcagaaggcaaa
cagcctgcacgcatcgacaacatcttgttgggtattaccaaagcgtccttgtctaccgac
tcgttcatctctgccgcatcgttccaagagactacccgtgtcttgaccgaagctgcgatc
atgggcaaacgcgacgacttgcgcggcttgaaagaaaacgtgattgtgggtcgtttgatt
ccggcgggtactggtttacattaccaccgcaaacgccgtcaacacacccaagcagcagaa
acacctgcagcagaataa
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