Vitreoscilla massiliensis: LVJ82_07745
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Entry
LVJ82_07745 CDS
T08422
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vms
Vitreoscilla massiliensis
Brite
KEGG Orthology (KO) [BR:
vms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vms03032
]
LVJ82_07745 (topA)
03400 DNA repair and recombination proteins [BR:
vms03400
]
LVJ82_07745 (topA)
Enzymes [BR:
vms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LVJ82_07745 (topA)
DNA replication proteins [BR:
vms03032
]
Prokaryotic type
DNA Topoisomerases
LVJ82_07745 (topA)
DNA repair and recombination proteins [BR:
vms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LVJ82_07745 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Lar_restr_allev
DZR
Motif
Other DBs
NCBI-ProteinID:
UOO90842
LinkDB
All DBs
Position
1472450..1474768
Genome browser
AA seq
772 aa
AA seq
DB search
MAKNLLIVESPSKAKTLKKYLGADFEVLASYGHVRDLVPKSGAVDPENDFAMKYQLVSRN
SKHVDAIVQAAREAEHLYLATDPDREGEAISWHLQQILDGKRGLKTLPKERVVFHEVTKK
AVLDAIANPRAISQELVDAQQTRRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC
ERENEIKAFTEQEYWSVHLDSHKGRSKFAAKLTHYQGDKLEQFALPNEAAQQSVIDDLTG
KEAKIIKIEKKKRSRNPAAPFTTSTLQQEAVRKLGMTTDRTMRTAQQLYEGIDVGQGAIG
LITYMRTDSVTLSEDALVEIRHYIENKLDKNFLPSKANVYKTKSKNAQEAHEAIRPTSIY
RTPDEVKPFLNNDQFRLYQMIWKRTVASQMTPAKFDLTSVDIAMGNGIFRTTGQIQTFAG
FLSVYEEDTDDDEDGEEGSKKLPDMSEGDVLPVDALRGEQHFTQPPPRYTEASLVKALEE
FGIGRPSTYASIISTLKDREYVTLDQKRFTPTDTGDIVNKFLTEHFGQYVDYNFTAKLED
QLDDIASGKRKWQPVMKTFWKDFDKQVKEKEDIPRAQITSEEIDEVCPKCGDHKLMIKFG
KRGRFIACQGYPDCDYTRNVNETAEEAAKAAEEPTEVEGRFCPKCGGQLIYKKGRFGKFI
GCSNYNSKPKCTYIEPLEKKDTGVACPKCGKGHLIERKSRYGKLFYSCETYPDCDYAVWN
PPINEPCPKCQWPLLTIKTTKRRGTEKVCPQKECGYAEQIEAPEAKKATEEE
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaacctgttgattgtggagtctccctccaaagccaaaaccctgaaaaaatac
ttaggtgccgactttgaagtgttggcatcgtatggccatgtgcgcgatttggtaccgaaa
agcggcgccgtcgaccctgaaaacgactttgcgatgaaataccaattggtcagtcgcaac
agcaaacacgtcgacgccatcgtacaggccgcccgtgaagccgaacacctctatctcgcc
accgacccggatagggaaggtgaagcgatttcttggcatttacagcaaattttggatggc
aaacgcggcctgaaaaccttgcccaaagagcgggtggtctttcatgaagtgaccaaaaaa
gccgtgttagacgccattgccaatccgcgtgccatttcgcaagaattggtcgatgcgcag
caaacgcgccgcgccttggactatttggtcggcttcaatctgtcgccattattgtggaaa
aaaatccgtcgcggtttgtccgctggtcgggtgcaaagtcctgctttgcgcttgatttgt
gaacgtgaaaacgaaatcaaagcctttaccgagcaagaatactggtcggtacacttggac
agccacaaaggccgcagcaaatttgccgccaaactcacccattatcaaggtgacaaactc
gagcaattcgcactgcccaatgaagccgcacaacaaagcgtgattgatgatttgacgggc
aaagaagccaaaatcatcaaaatcgagaagaaaaaacgcagccgcaatccagccgcaccg
tttaccacctcgactttgcaacaagaagctgtgcgcaaattgggcatgaccaccgaccgc
accatgcgcactgcacagcaattgtatgaaggtattgatgttggccaaggtgcgattggt
ttgattacctatatgcgtaccgactcggtgactttgtctgaagacgctttggtagaaatt
cgccactatattgaaaacaagctcgacaagaatttcttgcctagcaaggccaatgtgtac
aaaaccaaatcgaaaaatgcgcaagaagcgcatgaggccatacgccctacttcgatttac
aggacgcctgatgaggtcaaaccgtttttaaacaacgaccaattccgcctctaccaaatg
atttggaaacgcaccgtggccagccaaatgacgccggccaaattcgatttgacctcggtc
gacatcgcaatgggcaatggcatcttccgcaccactggtcaaattcaaactttcgccggc
ttcttaagcgtgtatgaagaagacaccgacgacgatgaggacggcgaagaaggcagcaaa
aaattgccagacatgagcgaaggcgatgtcttgcccgtggacgcgctgcgcggtgaacaa
cacttcacccaaccgccgccacgctatacagaagcctcattggtaaaagccttggaagaa
tttggcatcggtcgaccatcgacttacgccagcatcatttcgaccttgaaagaccgcgaa
tatgtgactttggatcagaagcgcttcacgccgaccgacaccggtgacatcgtcaacaaa
ttcctcaccgagcattttggccaatacgtggactacaatttcaccgccaagctagaagac
caattggacgacatcgccagtggcaaacgcaaatggcaaccggtgatgaaaaccttctgg
aaagactttgacaaacaagtcaaagaaaaagaagacatcccgcgcgcgcaaatcacctct
gaagaaatcgatgaagtgtgcccgaaatgtggcgatcataaattgatgattaaatttggc
aaacgcggccgcttcatcgcctgccaaggttatccagactgcgactacactcgcaacgtc
aacgaaaccgccgaagaagccgccaaagcagcggaagagccgaccgaagtcgaaggtcgt
ttctgtccgaaatgtggtggtcagttgatttacaaaaaaggccgttttggcaaattcatc
ggttgcagcaattacaacagcaaaccgaaatgcacttacatcgaacctttggagaaaaaa
gacaccggtgtggcctgtccgaaatgtggcaaaggccatttgattgagcgcaagagccgt
tatggcaaattgttctacagctgcgagacctatcccgattgtgattacgctgtgtggaac
ccaccgattaacgagccatgtccaaaatgtcaatggccgctgttgaccatcaaaaccacc
aaacgccgtggcaccgaaaaagtgtgtccacaaaaagaatgtggttatgcggagcaaatt
gaagcgccagaagccaaaaaagcaacagaagaagaataa
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