Vitreoscilla massiliensis: LVJ82_07905
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Entry
LVJ82_07905 CDS
T08422
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vms
Vitreoscilla massiliensis
Pathway
vms03030
DNA replication
vms03430
Mismatch repair
vms03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVJ82_07905
03430 Mismatch repair
LVJ82_07905
03440 Homologous recombination
LVJ82_07905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vms03032
]
LVJ82_07905
03400 DNA repair and recombination proteins [BR:
vms03400
]
LVJ82_07905
Enzymes [BR:
vms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LVJ82_07905
DNA replication proteins [BR:
vms03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LVJ82_07905
DNA repair and recombination proteins [BR:
vms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LVJ82_07905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
RNase_H_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
UOO90874
UniProt:
A0ABY4E6G6
LinkDB
All DBs
Position
complement(1507259..1508635)
Genome browser
AA seq
458 aa
AA seq
DB search
MNQAQVYAFVDLETSGGSAEHDRITEIAIIRVDGETVRRYQTLLNPQTHIPPFITAITGI
DNALVADAPTFATVADEVWTWLQDCIFLAHNVRFDFGFLKQAFAHVGKDFNPEQLCTVKL
SRRLYPEHKHHGLDQLIQRHGLRMPQRHRAMADADAIYQFWQMVQQSFDAKTLQAACQKV
MNRPSVPVHLQALNIDTLYNGYGVYVIYGDNDAPLYIGKSKTVKTRLLAHFRNDVRSGKE
MLLAQQARRLQIIECAGEVDALITEARLVKQWQPSLNRRLRRKDALYSWQWQRGDDGFDG
LVLVDAATAVLDGSSVYVGLWHSRSEAKKQLKSYLEPSTLCWQCLGLEAGMTGSPCFRQQ
IKQCAGACIGLVEAAAHNAELARRLKPHLLASWPVDGVAVLIEEQRWHVLDDWRYLGTVS
DVHEATALLAQPRPRLDKDIYQILYKHRALLHPLANML
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagcacaggtttacgcatttgtggatttggagaccagcggcggcagcgccgaa
catgaccgcatcaccgaaatcgccatcatccgcgtcgacggcgagaccgtcaggcgctac
caaaccttgctcaatccgcaaacccacattccaccttttatcaccgccatcaccggcata
gacaatgcgctggtggccgatgcaccgacgtttgcgaccgtggccgacgaggtgtggact
tggctgcaagactgcatattcttggcgcacaatgtgcgctttgattttggttttctcaaa
caggcatttgcgcatgtgggcaaggattttaatcccgagcaattgtgtacggtcaagttg
tcgcgccgcctttatcccgaacacaaacatcacggcttagaccaattgatacagcgccac
ggtttgcgcatgccacagcgccaccgcgccatggccgacgccgatgcgatttaccaattt
tggcaaatggtgcagcaaagctttgatgccaaaaccttacaggccgcttgtcagaaggtg
atgaatcggccgagtgtgccggtgcatttgcaggcgctgaacatagacacgctgtacaac
ggttatggcgtgtatgtgatttacggcgacaacgatgcgccgctgtacataggcaaaagc
aaaaccgtgaaaacgcgtttgttggcgcattttcgcaacgatgtgcgcagtggcaaggaa
atgctgttggcgcaacaggcgcggcgcttgcagattatcgaatgcgcgggcgaagtcgat
gctctcatcaccgaggcgcgcttggtcaaacagtggcaaccgagtttgaaccgccgtttg
cgccgaaaagatgcgctgtacagttggcaatggcaacgcggcgatgatggttttgatggc
ttggtcttggtggacgcggccactgcggtgttggatggttcgagcgtgtatgtgggcttg
tggcacagccgcagtgaggccaaaaagcagctcaaatcgtatttggaaccgagcacgctg
tgttggcaatgcttgggtttggaagccggcatgacaggctcgccgtgttttcgtcagcaa
atcaaacagtgcgctggtgcttgcatcggtttggttgaagcggcagcgcacaatgccgaa
ttggctcggcgcttaaaaccacatctgttggcaagctggccagtggacggtgtggcggtg
ttaatcgaggaacagcgctggcatgtgttagacgattggcgttatttgggcacggtcagc
gatgtgcatgaggcgacggcgctgttggcacagccacggccacgcttggacaaagacatc
taccaaatcctgtacaaacaccgcgctttattgcatccgctggccaacatgctctaa
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