Vitreoscilla massiliensis: LVJ82_09980
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Entry
LVJ82_09980 CDS
T08422
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
vms
Vitreoscilla massiliensis
Pathway
vms02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
vms00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LVJ82_09980
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
vms02022
]
LVJ82_09980
02035 Bacterial motility proteins [BR:
vms02035
]
LVJ82_09980
Two-component system [BR:
vms02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
LVJ82_09980
Bacterial motility proteins [BR:
vms02035
]
Pilus system
Twitching motility proteins
LVJ82_09980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_30
AAA_5
HTH_50
AAA_19
HTH_28
Motif
Other DBs
NCBI-ProteinID:
UOO87822
UniProt:
A0ABY4E343
LinkDB
All DBs
Position
complement(1914533..1916011)
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AA seq
492 aa
AA seq
DB search
MNTPLNAPVLVVDDEEDLRDLIEMTLLKMGLEVDTAEGVVAAKKKLDSQSYALILTDMRM
PDGSGLEVVEYLQQKNLDIPIAIITAYGNADQAVMALKAGAFDYIQKPVTLAQLRSLVKS
ALKVHEISTPAPVAEAPAAAAEPVLQAASTEAAASPAPIAPALPQFPRLRGDSQLLGEVK
RMIAKLAKGMVPVHITGESGTGKEQAARSIHELSPRKDGPFIAVNCGAIPENLMESEFFG
YKKGAFTGADSDREGFFQSANGGTIFLDEVADLPLTMQVKLLRAIQERAVRRIGESKETP
VDIRIVSATHKDLGREVEEGRFRQDLYYRLNVVSITMPALRELRDDLPMLIEHLLANNPM
GEDLVLSDAAKKQLLHYNYPGNFRELENILERATALAADGVIEPDDLQIHTHELIQDDED
DSESPVDVGDVSPLAHHFNMGQATLQEYLDEVERSILEQALAATKYNRTQAAKLLGISFR
SMRYRLDRLEIN
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaacactccgcttaatgccccagtactggtcgtcgatgacgaagaagatttgcgcgac
ttgattgaaatgaccttgctgaaaatgggtctggaagtagataccgccgaaggggtggtg
gctgctaagaaaaaattggacagccaatcgtatgccttgattttgaccgacatgcgcatg
cccgatggttcgggcttggaagtggttgagtatttgcaacaaaaaaacttggacattcca
attgccatcatcaccgcttacggcaacgccgaccaagccgtgatggccttgaaagccggc
gcgtttgactacattcaaaaaccggtgaccttggcacaattgcgcagcttggtgaaatct
gccttaaaagtacacgaaatcagcacccctgcaccagtagcagaagcacctgccgccgcc
gcagaacctgtgttacaggccgcctctactgaagctgcagccagtcctgcccctattgcg
ccggcattgccacaattcccacgcttgcgcggtgattcgcagctattgggcgaagtcaaa
cgcatgattgccaaactggccaaaggcatggtgcccgtacacatcaccggtgaatcgggt
acgggtaaagaacaggcagcgcgcagcattcatgaattgtcgccgcgcaaagatgggccg
tttattgccgtcaactgtggcgccattcctgaaaacctgatggaaagcgaatttttcggc
tataaaaaaggcgcgtttaccggcgccgacagcgaccgcgaaggctttttccaaagcgcc
aatggcggcaccatattcttggacgaagtggccgacttgccgctgaccatgcaagtgaaa
ttgctgcgtgccatccaagagcgggcggtgcgccgcatcggtgaaagtaaggaaacccct
gtcgatatccgcatcgtcagcgctactcataaagacttgggtcgtgaagtggaagaaggc
cgtttccgccaagacttgtattaccgcttgaatgtggtgtcgattaccatgccggctttg
cgcgaattgcgcgacgacttgccgatgttgattgagcacttgttggccaataatccgatg
ggcgaagacttggtcttgtcggatgcggccaagaaacaattgctgcattacaactacccc
ggtaacttccgcgagttggaaaacatcttggaacgtgccaccgctttggcagctgacggt
gtgatcgaacccgatgacttgcaaattcacacgcatgaattgattcaagacgacgaagac
gacagcgaatcaccagtggacgtgggcgatgtgtcaccactggctcaccatttcaatatg
ggtcaggcgacgctacaagagtatttggacgaggtagaacgctcgattttggaacaggcc
ttggcagcgacgaaatacaaccgcacccaagcggccaagttgctcggcatcagtttccgc
tccatgcgttaccgtttggatcgtttggaaatcaactag
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