Vitreoscilla massiliensis: LVJ82_13615
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Entry
LVJ82_13615 CDS
T08422
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vms
Vitreoscilla massiliensis
Pathway
vms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVJ82_13615 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vms03019
]
LVJ82_13615 (pcnB)
Enzymes [BR:
vms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LVJ82_13615 (pcnB)
Messenger RNA biogenesis [BR:
vms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LVJ82_13615 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
DUF2204
Motif
Other DBs
NCBI-ProteinID:
UOO88497
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All DBs
Position
2673922..2675268
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AA seq
448 aa
AA seq
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MTNKRLRKTAAADGSTVPALVLDGKDFGLSLSRLSNAAQKVVKQLHQSGFDAMVVGGGVR
DLMVGLTPKDFDIATNATPEEVRALFKRSRIIGRRFRIVHVMVGPETIEVTTYRGGDEVT
QNEQGRIMRDNTFGSQAEDALRRDFTCNALYYDAMANQVIDYHHGVADIKAQRLVMIGEP
KQRFREDPVRVLRALRLSTKLGFELDAAIAAVMAECSPWLGAEPPARLVDELIKLLLSGH
ALACLHNTRRLGIDTSVHPFLQVLIDQDLDEPFIQLALENTDTRIKQGKHVSIGFLLAAL
LWPKVRSAWQACIASGLKSQFALNEAIEQVRVELDSSSWGLPHRMTAMCREIWQMQAQFD
NQRGQRPFRLLAQARFRAAYDFLLLRHEVGEDNTDSVVWWQHFQAVSDDERAAMVQAQPV
AIEGEGTPATKKRRRRRKPKTANKSESA
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgacaaataagcggttaagaaaaacagctgccgcagacggcagcacggtgccagcattg
gttttggacggcaaagactttggtttgagtctgtcgcgcttgagcaatgcggcgcaaaaa
gtagtgaaacaattacaccaaagtggttttgatgccatggttgtgggcggcggcgtgcgc
gatttgatggtgggtttgacacctaaggattttgacattgccaccaatgccacgcccgaa
gaagtgcgcgccttgttcaaacgcagccgcatcatcggccgccgttttcgcattgtgcat
gtgatggtggggccggaaaccatagaagtcaccacttaccgtggcggcgatgaggtgaca
caaaacgaacaaggtcgcatcatgcgtgacaatacctttggcagccaagccgaggatgcg
ttacgccgcgactttacttgcaatgccttgtattacgatgccatggccaatcaagtgatt
gattaccatcacggtgttgccgacatcaaggcgcagcgtttggtgatgataggtgagccc
aaacagcgttttcgtgaagacccagtgcgggtattgcgggcgctgcgtttgtcgaccaaa
ttgggttttgaattggatgctgcaatcgcggcggtgatggccgagtgttcaccatggttg
ggagcagagccacccgcccgtttggtggatgagttaatcaaattattgttgtcaggccat
gccttggcttgtttgcacaatacccgccgtttgggcatagacacttcggtacacccattt
ttacaggtgttgatcgaccaagatttggacgagcctttcatacaattggccttggaaaac
actgatacccgtatcaaacaaggcaaacacgtctccatcggtttcttattggcagctttg
ttgtggccgaaagtgcgcagtgcgtggcaagcctgtatcgccagcggcctgaaaagccaa
tttgccttgaatgaggcgatagagcaagtgcgggtggaattggacagcagcagttggggt
ttgccacaccgcatgaccgccatgtgccgtgaaatctggcaaatgcaagcacagtttgac
aatcagcgaggccaacgtccgtttcgtttgttggcgcaagcgcgttttcgtgccgcttat
gatttcttattgttgcgtcatgaagtgggtgaggacaataccgacagcgtggtgtggtgg
cagcatttccaagcggtgtcggacgatgagcgcgctgccatggtgcaagcgcagccagtg
gcgatagagggtgagggcacgcctgccaccaaaaaacgccgccgccgtcgcaaaccgaaa
accgccaacaaatctgagagtgcatga
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