Vibrio metoecus: QYQ96_01470
Help
Entry
QYQ96_01470 CDS
T09673
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vmt
Vibrio metoecus
Pathway
vmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QYQ96_01470 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmt03019
]
QYQ96_01470 (rnr)
03016 Transfer RNA biogenesis [BR:
vmt03016
]
QYQ96_01470 (rnr)
Enzymes [BR:
vmt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QYQ96_01470 (rnr)
Messenger RNA biogenesis [BR:
vmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QYQ96_01470 (rnr)
Transfer RNA biogenesis [BR:
vmt03016
]
Prokaryotic type
tRNA degradation factors
QYQ96_01470 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
eIF-3_zeta
UPF0158
Motif
Other DBs
NCBI-ProteinID:
WKY93396
LinkDB
All DBs
Position
1:311919..314384
Genome browser
AA seq
821 aa
AA seq
DB search
MSDTTHLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHH
QMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIH
HDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGW
RLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKM
YQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASL
VEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVA
NVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLA
VNLDDRQIDFELVETSRKLRGQGKTSKKRADEARAKAQGKKEAATKGGRGKAPVKLQAKP
QAEATRHPEGEGRAKPKKTKAPKKRKDQARKKTSKARDKTK
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccacacatcttgatcctttcgctgatcgcgaagccgacaattatgacaat
ccaattccgagtcgtgagtacattctcgaatttttaacccaagccaatgttcccatgaat
cgcaacgatctgttcgaagccctcaaactagaaggcgaagagcaatatgaagggttgcgt
cgtcgcctgcgggcaatggaacgagatggccaactggtgttcacgcgccgtcaatgctat
gccttgccagaaaaactggaaatggtgaaaggctatgtgattggccacaaagacggccac
ggctgggttcgtccagaaggaagcttaaacaaagaaggcgatattttattgccccaccac
cagatgcgtacgctgatccatggtgattttgtcttagtacagccgagcggtactgataaa
cgcggccgcaaagaagggcgcttggtacgcattctcgaagagcgcaatggccaaattgtc
gggcgtttcttctttgaatacggttactcttatgtggtgccggatgactcacgcattcat
catgacattctgatccccaatgacttacgtgccggcgctcgcatgggcaacgtggtcgtg
attgaaattaccgaccgtggcacgcgtaaccgcggcatgatgggtaaagtcgttgaagtg
ttgggtgaaaacatggcaccgggtatggaaacgcaaattgcgattcgtactcaccaaatt
ccccatgaatggcccgcagaagttgagcagcaagtagcgggattgaccgaggaagtgcct
gaagaagccaagcaaggtcgtgtcgatctacgtgctttgccattagtcacgatcgatggc
gaggatgctcgagatttcgatgacgctgtctattgtgaagcgaaaaaaggcggtggctgg
cgtttatgggtcgcgattgccgacgtgagctattacgtacgtcccgataccgcgctggat
aaagaagcgatcaaccgtggaaactcggtctatttcccatcgcaagttgtcccaatgttg
cccgaagtgctgtcgaacggcctctgttcactcaacccacaagtggatcgcttgtgcatg
gtgtgtgaaatgaccgtatcggaaacaggtaaactctcgggctacaagcattacgaagcg
gtaatgaactcgcacgctcgcctgacttacaccaaagtgcatgaaatcctcgaaggggat
gaagaactgcgcgagcgttataaagcgctggttcctcatcttgaagagttgcacaaaatg
tatcaggtgctgaaaagtgcacgcgatgagcgtggcgcgattgagtttgaaaccgttgaa
accaaattcatcttcaacgctcagcgcaagattgaaagcattgagcctgttgtacgtaac
gatgcgcataagctgattgaagagtgtatgatcctcgccaacatcgcctctgcctctttg
gtagaaaaagccaaagaagcggcgttgtaccgtgtccatgagccaccaggtgaagaacgt
ctcactggcttccgtgatttcctcggtgagttggggctcgatctctccggtggccttgag
ccatcaccgaccgactacgccaatttaatgaagcaaattggtgaacgtccagataaagag
ctgatccaaaccatgttgctgcgctcgatgaagcaagcggtgtataacgcggataacgcg
ggtcactttggcttggcgttgaaacgttacgcacactttacatcgccaatccgtcgctac
ccggatttgctgctgcatcgtgcgatcaagtatctgatcgcgaagcaagaagggcgcaac
caagaccgttggacaccaacaggtggctatcactactccttcgatgacatggacttctac
ggtgagcagtgctccatgactgagcgccgcgctgatgatgcgacgcgcgaagtctcagac
tggctcaaatgcgagtacatgcaagatcatgtgggtgaagaattagaaggcgtcgtcgcg
aacgtcaccagtttcggcttctttgtccgtctcactgagctgcacattgacggcctggta
cacatttcgactctggctaacgactactaccactacgatccgattggtcagcgtctggtg
ggggaaagttttggtgccatctatcgtcttggtgatgcggtaaaagtaaaagtgttggcg
gtaaaccttgatgatcgccaaattgactttgaattggtcgaaactagtcgtaagctacgc
ggccaaggcaaaacctccaagaaacgtgccgatgaagcccgagccaaagcgcaaggtaaa
aaagaggctgcaaccaaaggcgggcgcggtaaagcaccggtgaaattacaggctaaacca
caggcagaagcaacacgtcacccagagggtgaaggtcgggctaagccgaaaaagaccaaa
gcgccgaaaaaacgtaaagaccaagctcgtaagaaaaccagcaaagcacgagacaaaacc
aaatag
DBGET
integrated database retrieval system
