Vibrio metoecus: QYQ96_04285
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Entry
QYQ96_04285 CDS
T09673
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vmt
Vibrio metoecus
Pathway
vmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QYQ96_04285 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmt03019
]
QYQ96_04285 (rne)
03009 Ribosome biogenesis [BR:
vmt03009
]
QYQ96_04285 (rne)
Enzymes [BR:
vmt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QYQ96_04285 (rne)
Messenger RNA biogenesis [BR:
vmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QYQ96_04285 (rne)
Ribosome biogenesis [BR:
vmt03009
]
Prokaryotic type
rRNA processing factors
QYQ96_04285 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
KH_1
Motif
Other DBs
NCBI-ProteinID:
WKY93895
LinkDB
All DBs
Position
1:complement(897061..900162)
Genome browser
AA seq
1033 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLKHWGAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSTSIYERA
LEHIRLVRPDFVNRVKKYDGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVIRDNESLAL
SVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETP
HFEVIRVRDGEEQDILSYLIPKKLEAMKEAEGKEVLDVDLKPKRIEEPVLKGFAAPAEAV
PAPAPKPKAEPQIVTEVVKPAQPGLFSRLFKAIANLFSSAPVTAQTETPVVQTGEPEKPR
RERNERNNDRRRNPRDRNRRRGNEENGERNERSDRNDKEGSSNQRKPQDRKPKQERGERT
ERPETDRPERQDRRNKRDESKTAKLLEQGRQLAAEAQQQDVNVKTTEPKEEKAAVVKERR
QRRKLTKQIRVKDQVATEELDLLQTAPISNEFEAPASVNLPATEDYADSAQDDSEDDQKQ
RRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHE
NTEVAQHVTHVTPSVAVESVTVETPRTLGGVAFPEMAMGKVIVRRQPAEIEPQRVEQEPL
VVAEPMIETIVEPVVVEVIEAPAVEIAAPAVIEAVEAAAVQPVGEDHVVIEKPAEQIKVV
KPVSADSKKLTAKAVIKQPSASSPMTKASGSQEIREVLVNAAPLRTERYHARGAGSQAAR
NQASSAMAKPQSE
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgcgttggtcgat
ggccaacgtctgttcgatctggatattgaaagtccggggcacgaatcgaaaaaagcaaat
atctataaaggccgcattacccgtattgaacctagtctagaagccgcattcgttgattac
ggtgctgaaagacacggtttcctccctctcaaagaaattgctcgcgaatacttccctgat
ggttacagctaccaaggtcgtccaaacatcaaagatgttttgaacgaaggtcaggaagtg
atcgtgcaaatcgaaaaagaggagcgcggtagtaaaggtgcggcactcaccacctttatc
tctctagcgggtagctatcttgttcttatgcccaacaaccctcgtgctggcggtatttct
cgccgtattgaaggtgatgaacgcactgaactaaaatcggcactcagctcacttgaacta
ccacaaggtatggggcttatcgtccgtactgccggcgttggaaaaagtgccgaagagtta
gagtgggacttaaacgtactacttaagcactggggtgccatcaagcaagcgtctgattca
aaccctgcaccgttccttatccaccaagaaagtaacgtgattgttcgtgcgatccgtgat
tacttgcgtcgtgatatcggtgaaattcttatcgacagtaccagcatttacgaacgtgct
cttgagcacatccgtttggtgcgccctgacttcgttaaccgtgttaagaagtacgatggc
gaagtgccgctgttcagccatttccaaatcgaaagccagattgaatcggctttccaacgc
gaagttcgcctgccttctggtggttcaatcgttattgacccaacggaagccttgacgtct
atcgacatcaactcagcacgcgcaaccaaaggtggcgatattgaagagaccgctctcaat
accaaccttgaggctgctgatgagatcgcacgccaactgcgtctacgtgacttaggtggc
ctagtcgttatcgattttatcgatatgacacctgtgcgccaccaacgtgaagtagaaaac
cgtctacgtgaagccgtacgtgttgaccgcgctcgtgttcagatcggccgcatttcacgc
ttcggtctgcttgagatgtcacgccaacgcttgagcccgtctctggcagaagctagccac
cacatctgtcctcgttgtacaggaactggggtgattcgtgataacgaatctttggcactg
tcggttctgcgcttaattgaagaagaagcactgaaagacaacacctcgcaagtacttgcg
gtggtacccgtgtctattgcttcttatctgttaaacgaaaagcgtcgctcaatcaaccac
attgaaaaagcacaacaagttcgtatcactatcgtgcctaattccgatatggaaacgcca
cactttgaagtgatccgcgtgcgtgacggtgaagaacaggacatcctgtcttacctgatc
ccgaaaaagctggaagcgatgaaagaagcggaaggcaaagaagttttagatgttgatctg
aaaccaaaacgcattgaagaacccgtactgaaaggttttgctgcaccagcagaagccgta
ccagctccggcacctaagccaaaagctgagccacaaatcgttactgaagtggtgaagcca
gcacaacctggtctgtttagtcgtctgtttaaagcgattgcgaacctgttctcttcagca
ccagttacagcacaaactgagactccggttgtacaaacgggtgaacctgagaaacctcgt
cgtgaacgcaacgaacgtaacaatgatcgtcgtcgtaaccctcgtgatagaaaccgccgt
cgtggtaatgaggaaaatggcgaacgtaatgaacgtagtgatcgtaacgataaagaaggc
tcaagcaatcaacgtaagccgcaagatcgtaaaccgaagcaagaacgtggtgagcgtact
gaacgcccagaaacggatcgtccagaacgccaagatcgccgcaacaagcgtgatgaaagc
aaaaccgctaagctgctagagcaaggccgtcaattagcggcagaggctcagcaacaagac
gtaaacgtaaaaacgacagagccaaaagaagaaaaggcggcggttgtgaaagagcgtcgt
caacgccgtaagctgactaagcaaattcgcgtgaaagatcaagtggcaactgaagagcta
gaccttctgcaaactgcacctatcagcaatgagtttgaagcgcctgcatctgttaatctg
ccagcaacagaagattacgcagactcagctcaagacgatagcgaagatgatcagaaacag
cgccgtaaccgtcgttctccacgccatctacgcgcgagtggtcagcgtcgtcgtcgtggt
cgtgatcgtcgtcctaacccgttccgcctacgtaaaggtggagttgcctctcctgaaatg
gcgatgggtaaagtgatgcctcgctacgatttagcaccacgcccacaatcgcgtcatgaa
aacactgaagtggctcaacatgtgacacacgtaactccatcggttgcggtagaaagtgta
accgtagaaactccgcgtactttaggtggcgttgctttccctgaaatggcaatgggcaaa
gtgattgttcgacgtcagccagctgagattgaacctcaacgagttgaacaagagcctctg
gtcgtggccgagccgatgattgaaacgattgtcgagcctgttgtggttgaagtgattgaa
gcacctgccgttgagattgctgctcctgctgtaattgaagccgtagaagcggctgcagta
caaccagtgggtgaagatcatgtggttattgagaaaccggctgaacaaattaaagtagtg
aagcctgtcagcgcagacagcaaaaaactcacagcaaaagcggttatcaagcaaccaagt
gcctcgtcaccaatgactaaagcttctggctcacaagagatccgtgaagtgttggttaac
gccgcgccattacgcacagagcgttatcacgctcgcggtgcgggtagccaagccgcgcgt
aatcaagcgagctcagcgatggctaagccgcaaagcgagtaa
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