Vibrio metoecus: QYQ96_10540
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Entry
QYQ96_10540 CDS
T09673
Symbol
vpsR
Name
(GenBank) cyclic-di-GMP-binding transcriptional regulator VpsR
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vmt
Vibrio metoecus
Pathway
vmt05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vmt00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
QYQ96_10540 (vpsR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vmt03000
]
QYQ96_10540 (vpsR)
Transcription factors [BR:
vmt03000
]
Prokaryotic type
Helix-turn-helix
Other families
QYQ96_10540 (vpsR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_22
AAA
AAA_5
HTH_29
AAA_16
AAA_2
HTH_22
HTH_7
HTH_50
HTH_23
AAA_14
HTH_17
NB-ARC
HTH_IclR
AAA_13
HTH_Tnp_1_2
DUF815
MCM
HTH_30
DUF134
Arf
TrmB
HTH_36
AAA_24
Motif
Other DBs
NCBI-ProteinID:
WKY92700
LinkDB
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Position
1:complement(2318673..2320007)
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AA seq
444 aa
AA seq
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MSTQFRMDSVPGSLVVVGGTYEPWLAVLEKVGWRCTQVADLRKADALFVETGPCIGIVDL
SHDEFSLNGIANLVSSHKQVRWLAFIREAQLSSDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPHFGSAGNMGLIGESMPMKRLRDQIKRIGPTDVSILIYGESGTGK
ETVAKAIHKTSSRAQKPFISVNCRAMSEKRLESELFGIGESDEVQQPLLLQADGGTLLLN
DILTLPKSQQLNLLRFLQEGTVETKQGVVEVDVRILAANSSDIEKALIDGDFNEELYHYI
NVLRINVPSLKERAADIVLLAKHFLQEYSKEYNAQARSFSEDAVRGLTRYHWPGNVRELM
NQIKRVVLMSDTVVLDESQLDLPKRSDGRRSLKSIRERSERDALLLVLESHSGQVSTAAK
ELGVSRATMYRLLNKHNLITDENF
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgagcactcaattccgtatggattcagtacctggctctctcgttgtggtgggaggtacc
tatgaaccctggctggctgtgttggaaaaagtaggttggcgttgtacccaagttgcggat
ttgcgtaaagcggatgcgctgtttgtagaaacaggcccctgtatcggtattgtggattta
agccatgatgagtttagcttaaacgggattgccaatttggtgagtagccacaagcaagtt
cgttggttagcctttattcgtgaagcacagttaagttcagataccatctgccagtttatc
gttaacttttgtatcgatttttttaccgcgccaatcccagatgcgcagttattgagcacc
atcgggcatcagctaggcatgctgaagctggaaaagaaagtttggccacattttggttcg
gccggcaatatgggcttgattggtgaatccatgccaatgaagcgcttgcgcgaccaaatc
aaacgaattggaccgactgacgtcagtattttgatttatggtgaaagcggaactggcaaa
gaaaccgtagcaaaagcgattcataaaacgtcatcgagagcgcaaaagccgtttatctca
gtcaattgtcgagccatgtcggagaagcggctggaaagtgaattgtttggtattggagag
agtgatgaggttcagcaaccgcttttattgcaagctgacggtggaactttgctcctcaat
gacattttgacgctacccaaaagtcagcagctcaacctactgcgtttcttgcaagaaggc
actgttgaaaccaaacaaggtgtcgtagaggtcgatgtgcggattttggcggccaactcc
tctgatattgaaaaagccttgattgatggtgatttcaatgaagaactttatcactacatc
aatgtgctacggattaatgtaccgagcctgaaggaacgcgctgcagatattgttctgctc
gcaaaacattttctacaggaatattccaaagaatataacgcccaagcgcgtagtttctct
gaagatgcagtacgcggcttaactcgctaccactggcctggcaatgtgcgcgagttgatg
aaccaaattaaacgagtggtattgatgtccgataccgtggtattggatgaatcacagctt
gatttgccaaaacgcagtgatggtcgtcgtagcttgaaaagtatccgtgaacgctcagag
cgtgatgcgctgttgctggttctggaatcacattctggtcaagtatcaacggcagcgaaa
gagctaggagtatcacgagcaaccatgtaccgtttgctgaataagcataatttgatcaca
gatgaaaatttctag
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