Vibrio metoecus: QYQ96_10860
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Entry
QYQ96_10860 CDS
T09673
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
vmt
Vibrio metoecus
Brite
KEGG Orthology (KO) [BR:
vmt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmt03019
]
QYQ96_10860 (hrpB)
Enzymes [BR:
vmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QYQ96_10860 (hrpB)
Messenger RNA biogenesis [BR:
vmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QYQ96_10860 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WKY92761
LinkDB
All DBs
Position
1:complement(2403402..2405864)
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AA seq
820 aa
AA seq
DB search
MSPLPIIEVMPTLLAGLTHSPQLILKAAPGAGKSTYFPLQLLQAGLFNGKIIMLEPRRLA
ARNIARYLAQQLGEEVGQRVGYRVRGENRVSRSTQLEIVTEGIMTRMLQNDPELDGVDVL
IFDEFHERSIHADTALALALEVQSALRDDLKIVVMSATLDQQALQNLLPQASYVESQGRG
FPIEIRYQPMRIDEPLVPAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDLVNEVE
ICPLYGQMDFAAQQRAIAPTVSGRRKVVLATNIAETSLTIEGIRMVLDSGLERSARFDLK
TGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDLAPLA
LELAQWGAQPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQLTAAGKEAHLLGVEPRIA
AMLLRADRLGESALQSALALAVLLEEPERQVVDVQHSLHRWQQGRHPKQKLLIQRAQSLA
HKLDTAFSLSSVDSAWLPLVACLAFPDRIAQQRGQQTGQFLLANGHGAWLAVEERVSAAD
YLVALDLMRGQTQASQIFSALELDILALERVLPALISRIEQVDWDEKAGRLSAEAQWRID
QLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDASEWLARARCAAEWLPEEAWPA
LDDDALLKHLELWLEPYLAGVTSVKGLQSVSVLQALKHYLGWELSQQLDEWLPTHHLLPT
GNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVMELLSPAQRPLQVTRDLASF
WAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTKRQLNA
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaccactgcccattattgaggtgatgccaacgttgttggctggcctcactcactct
ccgcaacttattctcaaagccgcgccgggtgccggtaagtccacctactttccgttgcaa
ttgctgcaagcgggactcttcaacggcaaaatcatcatgcttgagccgcgccgtttggct
gcgcgcaacattgcccgctatttggcgcagcaactgggtgaagaggttgggcagcgcgta
gggtatcgggtgcgaggtgaaaaccgagtcagccgttcaactcaactggagattgtgact
gaaggcattatgacgcgcatgctgcaaaacgatcctgagctggatggggtggatgtgctg
attttcgatgagtttcatgaacgcagcattcacgccgatactgccttagcgttggcgctt
gaagtgcagtctgcgctgcgggacgatttaaaaatcgtagtgatgtcggccacactcgat
cagcaagctttgcagaatttactgccgcaagcgagctatgtcgaatctcaagggcgtggt
ttcccgattgagattcgctatcaacctatgcggattgatgaacctttggtgccggcgatg
cagcgacaaattcgtcatctattgcagcatgaaacgggctcattgttagcatttttgccc
ggcgccgccagcatcaaccagttaaccgaacagttgagcgatttggtcaacgaggttgaa
atctgccctttgtatggacagatggactttgccgcgcagcagcgcgcaattgcccccact
gtttcggggcggcgcaaagtcgtattggcgaccaatattgctgaaacctcgctgaccatc
gaaggcattcgcatggtactggatagtgggcttgaacgcagcgcgcggtttgacctcaaa
accggcattacccgtcttgaacaagtgcggattgcgcagtcttcagctgaacagcgggca
gggcgcgctggacgtttagagccggggatttgcgtgcgtttatacagcgaggcgcagctc
aagcagcagccttgggtgccagagccggaaatgctacatacggacttagcgccactggca
ttagaactcgcgcaatggggcgcacaacctagcgacttggcttggttgaatttgccaccg
agcagtgcgtttgcgcaggcgcagcaactgctgcagcgtcttggccttttggatgcacgc
acacaactcactgcggcgggtaaagaagctcacttactgggcgttgagccacggattgcg
gcgatgctgctgcgcgccgatcgcttaggtgagtcggccttgcaaagcgctttagcgttg
gcggtgttacttgaagagccggaacggcaagtggttgatgtacaacatagcttgcaccgc
tggcagcaaggtcgtcatcctaaacaaaaactgctgatccaacgcgcccaatctttggcg
cacaaactcgatacggcattttcactctcctcggttgattcagcatggctgcctttagtg
gcgtgtttggcatttccagatcgaattgcccagcagcgcggccaacaaacagggcaattt
ttactcgccaatggccatggcgcttggctagcggtggaagagcgtgtgtccgccgccgat
tatctggtcgccttggatttaatgcgcggccaaacccaagccagtcaaatattcagcgcc
cttgagctggatatcctcgcgcttgagcgcgtattaccagcgctgatttctcggattgaa
caagtggattgggatgaaaaagccggccgcttgagcgcggaagcgcagtggcgaatcgat
caattggtgcttcgtcgtgaaaagctgccagagcccgataaacaaaaaatgacacaagct
ttgctgagctatgtacggcgcaaaggcttaacagtgttacagtggagcgaagacgcgagc
gagtggcttgcccgtgcacgctgcgccgccgaatggctgccagaagaagcgtggcccgcc
ttggatgatgatgcactgcttaaacatctagagctgtggttagagccgtatttagccggc
gtgacctcagtcaaaggtttgcagagtgtctccgtgttgcaagcgctgaagcactatctt
ggctgggagctcagtcagcagcttgacgagtggctgccaacccatcatctgctgccaacg
gggaatcataaaaaaatccgttatcagttagggatggagcctacgctctcggtgcgcatg
caggaagtgtttggcgagcaaagttcaccgcgtgttgccaaagggacgcgtgcggtggtg
atggaattgctttctcccgcgcagcgcccgttgcaagttacccgcgatctcgccagtttt
tgggcgggagcgtataaagaagtgcaaaaagagatgaaaggccgctacccgaaacatgtg
tggccggatgatcctgccaatcatgtggcaaccagtaaaaccaaacgacaattgaacgca
tga
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