Vibrio metoecus: QYQ96_11795
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Entry
QYQ96_11795 CDS
T09673
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
vmt
Vibrio metoecus
Brite
KEGG Orthology (KO) [BR:
vmt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vmt03019
]
QYQ96_11795 (csrD)
Messenger RNA biogenesis [BR:
vmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QYQ96_11795 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
WKY92921
LinkDB
All DBs
Position
1:complement(2586560..2588572)
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AA seq
670 aa
AA seq
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MRYTPTLKLSTRLVAFVTMTVISAMFILFLGGTLSFQRLGQEYLNHYLQGIVDVVDKEME
DPDAAYSMQRWMPKMLQAGGIIEMQLSSEAGTVYRFKDTANTIESARLYQVALPLKRNPD
YVMHFKAIPPYLSYNYSLQAMWSTTLAVLLIIFFLLRGLKWLKEQLLGSELLEERGRMIL
AGRVEQHAKGDPREWPYTASEALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRV
LYDSKLESALLESGAHGGVMMLRLDDLESTREESPKRLVDEFIIEVGECLSNIVQRYPDA
ILSRYYDDVFALFIPHQGSKDVALVATQAIKLLERIVPPEPLSEENWFHIGVTMYQEGER
RGRIIDEMETALKSAQLQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQALRPDAILLYRQA
CYLLSANGEREFVHYELFARIQDPQQGILKASRFSSALETVGYEAMLDRAVFGSVVSFLK
QAERIEPVSVNLHVVPFSDKRYARFIRNELMQMPFYLRSALSFEFAEAHLIKHLDYMRPI
IRMLAGLGCKVVVGQAGRTIVSTHYIKDLKINYLKLHRSLIKKIDQRHENQLFVRSLVGV
CGGTQTEVIAVGVETEQEWQTLQMLGVKGVQGRLFDDEQQMLPPQPREQTKLSQRMSLIP
VGKRNRWRTK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaggtatacaccgacgttaaaactgagcactcggcttgttgcgtttgtgaccatgacg
gtgatcagtgccatgtttattctgttcctcggtggtacgttgtcttttcagcgtcttggg
caggaataccttaatcattatctgcagggaatcgtcgacgttgtcgacaaagagatggaa
gatcccgatgcggcatattcgatgcagcgttggatgccgaaaatgttacaggccggtggg
atcattgaaatgcagctttcgtcggaggctggaaccgtctaccgtttcaaagatacggcc
aacaccattgaatcggcacgcttatatcaagtcgccttacccctcaaacgtaatcctgat
tacgtgatgcattttaaagccataccgccatacctcagttacaactattcgttgcaagcc
atgtggtcgaccacgttagcggtcttgctgatcatcttcttcttattgcggggcttgaag
tggctgaaagagcagcttttaggctcggaattgctggaagaacgtggacggatgatctta
gctggccgcgttgagcaacatgcgaaaggcgatcctagagagtggccgtatacggctagt
gaagcgttggatcgcctgattgaagagttgcaggatgcgcgccaagagcgtagccgtttt
gacacctttattcgcagccaaacctttttagaccaattgactggtactgcaaatcgcgtg
ttgtacgacagcaaactagaatcggcattgttggaaagtggggctcatggtggcgttatg
atgctgcgtttggatgatctcgaatccacgcgtgaagagagccccaagcgtttggtggac
gagtttattatcgaagttggtgagtgtctttctaatatcgtccaacgttatccagacgcc
attctttctcgttactacgatgatgtatttgcgctgttcatccctcatcagggtagtaaa
gatgtggcactagtggcaacacaagcgattaagttactcgagcgaattgtgcctccggag
ccgctttcggaagaaaattggttccatattggtgtcaccatgtatcaagagggggagcgg
cgtgggcgcattatcgatgaaatggaaaccgcactaaaaagtgcacaactccaaggtgtg
aatgcgtggagtcgtttccaaaagccaaagcagttacaggaggaccgtggcagcgtgcgc
tggcggactctatttgagcaagctttacgtccggatgcgattttgttgtatcgacaggct
tgctatcttcttagtgccaatggtgagcgagaatttgtgcattatgaattgtttgcacga
atccaagatccgcaacagggcattttgaaagcgtcgcgttttagttcggcattagaaacg
gtcggctatgaagcgatgttagatcgtgcggtgtttggttctgttgtcagttttcttaag
caggccgagcggattgaacctgtttcggttaacttacacgttgtcccgtttagtgataaa
cggtatgctcgctttattcgtaacgaattgatgcagatgcctttttatcttagaagtgca
ttatcttttgagttcgccgaagcgcatttgatcaagcatttggattatatgcgcccaatt
attcgtatgttagccggattgggctgcaaagtcgtggtcgggcaggcgggacgaacaatt
gttagcactcactatatcaaagacttaaaaatcaactatcttaaacttcatcggagtttg
attaaaaaaatcgaccaacgccacgagaaccagttgtttgtacgcagcttggtgggcgtg
tgcggaggtacacaaaccgaagtgattgcggtaggggttgagaccgaacaagagtggcaa
accttacagatgcttggtgttaagggagtgcaagggcggttgtttgatgatgaacaacaa
atgctgccgccacaacctcgcgaacaaacgaagctatcccagcgtatgtctttgataccc
gtcggtaaacgcaatcgatggagaaccaaatag
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