Vibrio metoecus: QYQ96_12235
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Entry
QYQ96_12235 CDS
T09673
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vmt
Vibrio metoecus
Pathway
vmt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vmt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QYQ96_12235 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vmt03021
]
QYQ96_12235 (rpoC)
03400 DNA repair and recombination proteins [BR:
vmt03400
]
QYQ96_12235 (rpoC)
Enzymes [BR:
vmt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QYQ96_12235 (rpoC)
Transcription machinery [BR:
vmt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QYQ96_12235 (rpoC)
DNA repair and recombination proteins [BR:
vmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QYQ96_12235 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WKY92978
LinkDB
All DBs
Position
1:complement(2670403..2674608)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLSSMDLQAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPTEAEKAYRTK
TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ
ISNLLNEAYRKLGLKDTVVFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL
GRVVAEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIQVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL
HNAKFVINKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADSDAVAAGETVANW
EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEG
ERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLPGETVEYSQVKIANRQLVEEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGPS
AEQATDNLAALLNAGFSSDDE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagactgaagaatttgacgcgatc
aaaatcggtctggcttcaccagacatgatccgttcatggtcttttggtgaagtgaaaaaa
cctgaaaccatcaactatcgtacgttcaagcctgagcgtgatggtttgttctgtgcgcgt
atttttggcccggtaaaagactacgaatgtctttgtggcaaatataagcgtctgaaacac
cgtggcgtgatttgtgagaagtgtggcgttgaagtcactcaaactaaagttcgtcgtgac
cgtatgggccacatcgagctggcttctccagttgcacacatctggttcctgaagtctctg
ccatctcgtatcggtctgctgatggacatgcctctgcgtgacatcgaacgcgtactgtac
tttgaaatgtacgtagtgactgagccaggcatgactgaccttgaacgtggtcaaatgctg
actgaggaagagtacctcgaccgtttggaagagtggggcgacgagttcaccgcgaaaatg
ggtgcagaagcgatcaaagatctgctgtcatctatggatctgcaagcagaagctgagcag
atgcgcgaagagctggacaccactaactctgaaaccaaacgtaagaagctgactaagcgt
ctgaagctggttgaagcgttcgttgcatcaggtaacaaacctgaatggatgatcctgact
gtattgccagttctgccgcctgatctacgtccactggttccactggatggcggtcgtttc
gcaacgtcagatctgaacgatctgtaccgtcgcgttatcaaccgtaacaaccgtttgaag
cgtctgcttgaactggctgcaccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgtggatgcgctgttggataacggtcgtcgtggtcgtgcgatcacgggctcgaac
aagcgtccgctgaagtctctggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactcaggccgttcggttatcaccgtaggtccatac
ttgcgtctgcaccaatgtggtctgccgaagaaaatggctcttgagctgttcaaaccattc
atctacagcaagctggaaactcgtggcctagcaacgacgatcaaagccgctaagaaaatg
gttgagcgcgaagaagcggtggtatgggatatcttggatgaagttatccgtgaacaccca
gtactgctgaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaaccggtt
cttatcgaaggtaaagcgatccaactgcacccactggtgtgtgcggcgtataacgcggac
ttcgacggtgaccaaatggcggtacacgttccactgacgcttgaagcgcagctggaagct
cgtaccctgatgatgtcaaccaacaacattctgtcgccagcgtcaggtgatccaatcatc
gtaccgtctcaggacgtggtactgggtctgtactacatgacccgtgaaaagatcaacgcg
aaaggcgaaggtatgtacctgactggcccaactgaggctgagaaggcgtaccgtactaag
actgctgaactgcacgctcgcgttaaagtacgtattaccgaaaccatcaagcatgaaaac
ggtaagttgacgactgaaaccaagatgattgacacgaccgttggccgtgccatgttgtgg
caaatcgtaccgaaaggtctgccatacagcttggtgaaccagaagctaggtaagaagcaa
atttctaacctgctcaacgaggcgtaccgtaagctaggtctaaaagacaccgttgtcttc
gctgaccaaatcatgtacaccggtttcgcatacgcggcactgtcaggtgtatcggttggt
atcgacgatatggtagtaccagccgctaagtacactgaaattgctgaagcggaagaagaa
gtacgcgaaattcaagagcagttccagtctggtctggttaccgctggcgaacgctacaac
aaagtgatcgatatttgggcctcaaccaacgatcgcgtagcgaaagcgatgatggaaaac
ctctcttctgagcaggtgatcaaccgtcaaggcgaacaagaaaaacaagagtcgttcaac
agcatctatatgatggccgactcaggtgctcgtggttctgctgctcagatccgtcagttg
gcgggtatgcgtggtctgatggcgcgtccagatggctcgatcatcgaaacgccaatcacg
gcaaactttaaagaaggtctaaacgttcttcagtactttatctcaacgcacggtgctcgt
aagggtctggcggatacggcattgaaaacggcgaactccggttacctgactcgtcgtctg
gtagacgtagcgcaagacgttgttgttacagaacatgactgtggcaccttagaaggcgtg
gtgatgacaccacacatcgaaggtggtgacgttaaagttgcgttgactgagctggctctg
ggccgtgtggttgcggaagatatcctcaaaccaggtacagacgaagtgctgatcccacgt
aatacgctgcttgatgaaaagtggtgtaaggtgatcaacgataactcagttgaccaaatc
caagtacgttcagtcgtaacttgtgattctgacttcggttgttgtgcacaatgttacggt
cgtgacctggcacgtggtcacttggtgaaccaaggtgaagcggtcggtgttatcgcggca
cagtcaatcggtgaaccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcaacagcagcggcagaaaacagcatccaagcgaaaaacaacggttctgtgaaactg
cataacgcgaagttcgtaatcaacaaagatggcaagctcgttatcacgtctcgtgcttct
gagctgaccattattgacgaatttggtcgtaccaaagagaaacacaaactgccatacggc
tctatgctgagcaaggccgatagcgatgccgttgcagcgggtgaaactgttgcaaactgg
gaagcgcacaccatgccaatcatcactgaagtggctggtcgcgtacagtttgtggatatg
atcgatggcgtaactgtttctcgtcaaacggacgatctgacaggtctgtcttcaagtgaa
gtgacggaagccgcagcgcgtcctgcagcaggtaaagatatgcgtccagccattaagctg
gttgacgcaaatggtaaagatgtcctgatcccaggtactgatatgccagctcaatacttc
ctgccaggtaaagcgattgtgaacttggacgacggcgctgaagtgaatgtgggtgataca
ctggctcgtattcctcagaagtctggcggtaacaaggacatcactggtggtctaccacgc
gttgctgacctgttcgaagcgcgtaagccaaaagagcctgcgattctggctgagcactca
ggtacggtatcgttcggtaaagagaccaaaggtaagcgtcgtctgatcatcactcgtgac
agtggtgatacttacgaagagatgatccctaaacatcgtcaattgaacgtgtttgaaggt
gagcgcattgagcgtggtgatgtgattgcggacggcccagagtcgccacatgacattctg
cgtctgcgtggtatccatgcagtgaccacttacatcgcgaacgaggttcaggaagtttac
cgtctacaaggcgttaagattaacgataagcacatcgagactatcgttcgtcaaatgctg
cgtaagtgtacgatcaccttcgcgggtgactcagagttcttgcctggcgagacggttgag
tactcacaagtgaagatcgcgaaccgtcaactggttgaagaaggcaaagagccagctcgt
ttcgagcgtgagctgctaggtattaccaaagcatctctggcgactgagtccttcatctcg
gcagcatcgttccaagaaaccactcgcgttctaaccgaagcagcggtatctggtaagcgt
gacgatctgcgcggtctgaaagagaacgtaatcgttggccgtctgatcccggctggtact
ggttttgcgtaccaccaagatcgtcaagccaaacgtgcacaagaacagcaaggtccatcg
gctgagcaagccactgacaacctcgctgcactgttgaatgcaggtttctcttctgacgac
gagtaa
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integrated database retrieval system
